Genomic map of Lactococcus virus ASCC532 (JQ740813)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JQ740813
Definition
Lactococcus Phage ASCC532, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus.
DB of origin
PVOG
Length
32384
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
34.68
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFE88104.1 JQ740813_p45 hypothetical protein phrog_1449 unknown function unknown function -1 27061 27327
AFE88089.1 JQ740813_p30 early protein phrog_1509 unknown function unknown function -1 20999 21253
AFE88087.1 JQ740813_p28 hypothetical protein phrog_1441 unknown function unknown function -1 20657 20830
AFE88112.1 JQ740813_p53 hypothetical protein phrog_1952 unknown function unknown function 1 30596 30724
AFE88102.1 JQ740813_p43 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 25732 26286
AFE88084.1 JQ740813_p25 hypothetical protein phrog_1430 unknown function unknown function -1 19717 19986
AFE88079.1 JQ740813_p20 hypothetical protein phrog_1434 unknown function unknown function 1 16818 17111
AFE88069.1 JQ740813_p10 structural protein phrog_1429 virion structural protein head and packaging 1 6198 6512
AFE88111.1 JQ740813_p52 hypothetical protein phrog_1656 unknown function unknown function -1 30277 30465
AFE88065.1 JQ740813_p6 portal protein phrog_12 portal protein head and packaging 1 3087 4223
AFE88077.1 JQ740813_p18 hypothetical protein phrog_1424 tail protein tail 1 14805 15701
AFE88095.1 JQ740813_p36 hypothetical protein phrog_1083 unknown function unknown function -1 22648 23013
AFE88081.1 JQ740813_p22 bifunctional anti-holin / holin phrog_1379 unknown function unknown function 1 17934 18287
AFE88088.1 JQ740813_p29 hypothetical protein phrog_1820 unknown function unknown function -1 20830 21006
AFE88092.1 JQ740813_p33 early protein phrog_1225 unknown function unknown function -1 22019 22327
AFE88114.1 JQ740813_p55 Holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 30857 31339
AFE88071.1 JQ740813_p12 structural protein phrog_1440 virion structural protein head and packaging 1 6841 7206
AFE88076.1 JQ740813_p17 tape measure protein phrog_58 tail length tape measure protein tail 1 11815 14805
AFE88062.1 JQ740813_p3 hypothetical protein phrog_9973 unknown function unknown function 1 1027 1176
AFE88105.1 JQ740813_p46 hypothetical protein phrog_1632 unknown function unknown function -1 27284 27571
AFE88109.1 JQ740813_p50 hypothetical protein phrog_2541 unknown function unknown function -1 29007 29228
AFE88063.1 JQ740813_p4 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1178 2800
AFE88093.1 JQ740813_p34 hypothetical protein phrog_1508 unknown function unknown function -1 22327 22446
AFE88101.1 JQ740813_p42 early protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 25369 25728
AFE88096.1 JQ740813_p37 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 23010 23435
AFE88103.1 JQ740813_p44 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26283 27074
AFE88082.1 JQ740813_p23 lysin phrog_670 endolysin lysis 1 18284 18964
AFE88098.1 JQ740813_p39 hypothetical protein phrog_4000 unknown function unknown function -1 23726 23986
AFE88074.1 JQ740813_p15 structural protein phrog_1420 virion structural protein head and packaging 1 11008 11283
AFE88067.1 JQ740813_p8 structural protein phrog_1393 minor head protein head and packaging 1 4733 5914
AFE88106.1 JQ740813_p47 hypothetical protein phrog_1405 unknown function unknown function -1 27660 27917
AFE88064.1 JQ740813_p5 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2790 3074
AFE88083.1 JQ740813_p24 hypothetical protein phrog_3874 transglycosylase other -1 19093 19656
AFE88061.1 JQ740813_p2 hypothetical protein phrog_4501 unknown function unknown function 1 784 1014
AFE88080.1 JQ740813_p21 receptor binding protein phrog_1630 receptor binding tail protein tail 1 17101 17919
AFE88099.1 JQ740813_p40 hypothetical protein phrog_1919 unknown function unknown function -1 24232 24549
AFE88066.1 JQ740813_p7 protease phrog_80 head maturation protease head and packaging 1 4204 4740
AFE88070.1 JQ740813_p11 structural protein phrog_1484 virion structural protein head and packaging 1 6509 6850
AFE88072.1 JQ740813_p13 neck passage structure protein phrog_16313 virion structural protein head and packaging 1 7263 9929
AFE88085.1 JQ740813_p26 hypothetical protein phrog_10611 unknown function unknown function -1 19987 20136
AFE88078.1 JQ740813_p19 hypothetical protein phrog_1432 tail associated lysin tail 1 15701 16828
AFE88068.1 JQ740813_p9 structural protein phrog_1428 head-tail connector protein connector 1 5935 6198
AFE88110.1 JQ740813_p51 hypothetical protein phrog_2413 unknown function unknown function -1 29750 29869
AFE88073.1 JQ740813_p14 major capsid protein phrog_1433 major tail protein tail 1 10048 10953
AFE88100.1 JQ740813_p41 hypothetical protein phrog_1295 unknown function unknown function -1 25138 25353
AFE88060.1 JQ740813_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 263 787
AFE88091.1 JQ740813_p32 hypothetical protein phrog_3530 unknown function unknown function -1 21582 22022
AFE88086.1 JQ740813_p27 hypothetical protein phrog_1415 unknown function unknown function -1 20310 20657
AFE88107.1 JQ740813_p48 hypothetical protein phrog_3604 unknown function unknown function -1 27889 28071
AFE88113.1 JQ740813_p54 hypothetical protein phrog_1436 unknown function unknown function 1 30729 30860
AFE88075.1 JQ740813_p16 structural protein phrog_1421 virion structural protein head and packaging 1 11303 11815
AFE88094.1 JQ740813_p35 hypothetical protein phrog_3002 unknown function unknown function -1 22443 22637
AFE88097.1 JQ740813_p38 hypothetical protein phrog_1825 DNA methyltransferase other -1 23491 23736
AFE88090.1 JQ740813_p31 hypothetical protein phrog_3365 unknown function unknown function -1 21317 21505
AFE88108.1 JQ740813_p49 DNA polymerase subunit phrog_1284 unknown function unknown function -1 28064 29014