functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
JQ740813 |
Definition |
Lactococcus Phage ASCC532, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
PVOG |
Length |
32384 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
34.68 |
Number of singletons |
0 |
Number of paralogs |
1 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
AFE88104.1 | JQ740813_p45 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 27061 | 27327 |
AFE88089.1 | JQ740813_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20999 | 21253 |
AFE88087.1 | JQ740813_p28 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 20657 | 20830 |
AFE88112.1 | JQ740813_p53 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30596 | 30724 |
AFE88102.1 | JQ740813_p43 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25732 | 26286 |
AFE88084.1 | JQ740813_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19717 | 19986 |
AFE88079.1 | JQ740813_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16818 | 17111 |
AFE88069.1 | JQ740813_p10 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6198 | 6512 |
AFE88111.1 | JQ740813_p52 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 30277 | 30465 |
AFE88065.1 | JQ740813_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3087 | 4223 |
AFE88077.1 | JQ740813_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14805 | 15701 |
AFE88095.1 | JQ740813_p36 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 22648 | 23013 |
AFE88081.1 | JQ740813_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17934 | 18287 |
AFE88088.1 | JQ740813_p29 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20830 | 21006 |
AFE88092.1 | JQ740813_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 22019 | 22327 |
AFE88114.1 | JQ740813_p55 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30857 | 31339 |
AFE88071.1 | JQ740813_p12 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6841 | 7206 |
AFE88076.1 | JQ740813_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11815 | 14805 |
AFE88062.1 | JQ740813_p3 | hypothetical protein | phrog_9973 | unknown function | unknown function | 1 | 1027 | 1176 |
AFE88105.1 | JQ740813_p46 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 27284 | 27571 |
AFE88109.1 | JQ740813_p50 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 29007 | 29228 |
AFE88063.1 | JQ740813_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1178 | 2800 |
AFE88093.1 | JQ740813_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 22327 | 22446 |
AFE88101.1 | JQ740813_p42 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25369 | 25728 |
AFE88096.1 | JQ740813_p37 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23010 | 23435 |
AFE88103.1 | JQ740813_p44 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26283 | 27074 |
AFE88082.1 | JQ740813_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 18284 | 18964 |
AFE88098.1 | JQ740813_p39 | hypothetical protein | phrog_4000 | unknown function | unknown function | -1 | 23726 | 23986 |
AFE88074.1 | JQ740813_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 11008 | 11283 |
AFE88067.1 | JQ740813_p8 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4733 | 5914 |
AFE88106.1 | JQ740813_p47 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27660 | 27917 |
AFE88064.1 | JQ740813_p5 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2790 | 3074 |
AFE88083.1 | JQ740813_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 19093 | 19656 |
AFE88061.1 | JQ740813_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 784 | 1014 |
AFE88080.1 | JQ740813_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 17101 | 17919 |
AFE88099.1 | JQ740813_p40 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 24232 | 24549 |
AFE88066.1 | JQ740813_p7 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4204 | 4740 |
AFE88070.1 | JQ740813_p11 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6509 | 6850 |
AFE88072.1 | JQ740813_p13 | neck passage structure protein | phrog_16313 | virion structural protein | head and packaging | 1 | 7263 | 9929 |
AFE88085.1 | JQ740813_p26 | hypothetical protein | phrog_10611 | unknown function | unknown function | -1 | 19987 | 20136 |
AFE88078.1 | JQ740813_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15701 | 16828 |
AFE88068.1 | JQ740813_p9 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5935 | 6198 |
AFE88110.1 | JQ740813_p51 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 29750 | 29869 |
AFE88073.1 | JQ740813_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 10048 | 10953 |
AFE88100.1 | JQ740813_p41 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 25138 | 25353 |
AFE88060.1 | JQ740813_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 263 | 787 |
AFE88091.1 | JQ740813_p32 | hypothetical protein | phrog_3530 | unknown function | unknown function | -1 | 21582 | 22022 |
AFE88086.1 | JQ740813_p27 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 20310 | 20657 |
AFE88107.1 | JQ740813_p48 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 27889 | 28071 |
AFE88113.1 | JQ740813_p54 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30729 | 30860 |
AFE88075.1 | JQ740813_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 11303 | 11815 |
AFE88094.1 | JQ740813_p35 | hypothetical protein | phrog_3002 | unknown function | unknown function | -1 | 22443 | 22637 |
AFE88097.1 | JQ740813_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 23491 | 23736 |
AFE88090.1 | JQ740813_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 21317 | 21505 |
AFE88108.1 | JQ740813_p49 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 28064 | 29014 |