Genomic map of Yersinia phage R (JX000007)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX000007
Definition
Yersinia phage R, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; unclassified Teseptimavirus.
DB of origin
PVOG
Length
37260
Host Name
Yersinia pestis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
48.36
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGB07370.1 JX000007_p47 hypothetical protein phrog_8173 unknown function unknown function 1 35806 35979
AGB07361.1 JX000007_p38 internal virion protein C phrog_1339 internal virion protein head and packaging 1 25568 27811
AGB07343.1 JX000007_p20 hypothetical protein phrog_4023 unknown function unknown function 1 11604 12011
AGB07329.1 JX000007_p6 hypothetical protein phrog_12128 unknown function unknown function 1 5423 5512
AGB07338.1 JX000007_p15 lysozyme phrog_822 amidase lysis 1 8424 8879
AGB07333.1 JX000007_p10 hypothetical protein phrog_1312 unknown function unknown function 1 6430 6582
AGB07368.1 JX000007_p45 DNA maturase B phrog_38 terminase large subunit head and packaging 1 34623 36467
AGB07332.1 JX000007_p9 hypothetical protein phrog_3106 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6009 6479
AGB07357.1 JX000007_p34 tail tubular protein A phrog_446 tail protein tail 1 21474 22064
AGB07327.1 JX000007_p4 host dGTPase inhibitor phrog_2949 dGTPase inhibitor; target for F exclusion other 1 3994 4251
AGB07366.1 JX000007_p43 phage lambda Rz-like lysis protein phrog_1327 Rz-like spanin lysis 1 34170 34613
AGB07331.1 JX000007_p8 hypothetical protein phrog_236 nucleotide kinase other 1 5798 6028
AGB07336.1 JX000007_p13 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 7542 7997
AGB07359.1 JX000007_p36 internal virion protein A phrog_308 internal virion protein head and packaging 1 24550 24966
AGB07347.1 JX000007_p24 host recBCD nuclease inhibitor phrog_9014 Gp5.9-like inihibitor of recBCD nuclease moron, auxiliary metabolic gene and host takeover 1 14669 14827
AGB07339.1 JX000007_p16 HNH endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 8943 9308
AGB07360.1 JX000007_p37 internal virion protein B phrog_805 internal virion protein head and packaging 1 24971 25561
AGB07369.1 JX000007_p46 hypothetical protein phrog_8982 unknown function unknown function 1 35269 35502
AGB07346.1 JX000007_p23 hypothetical protein phrog_1334 unknown function unknown function 1 14460 14669
AGB07324.1 JX000007_p1 ocr DNA mimic protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 532 954
AGB07326.1 JX000007_p3 hypothetical protein phrog_2490 unknown function unknown function 1 3861 3992
AGB07340.1 JX000007_p17 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 9283 10983
AGB07335.1 JX000007_p12 single-stranded DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6843 7541
AGB07353.1 JX000007_p30 head-to-tail joining protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17096 17488
AGB07351.1 JX000007_p28 host range protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16438 16839
AGB07345.1 JX000007_p22 host H-NS-interacting protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 14164 14460
AGB07365.1 JX000007_p42 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 33807 34076
AGB07367.1 JX000007_p44 Rz1-like lysis protein phrog_4306 Rz-like spanin lysis 1 34285 34536
AGB07350.1 JX000007_p27 internal head protein phrog_1391 unknown function unknown function 1 16172 16438
AGB07356.1 JX000007_p32 minor capsid protein phrog_267 major head protein head and packaging 1 20213 21405
AGB07330.1 JX000007_p7 hypothetical protein phrog_1777 unknown function unknown function 1 5538 5798
AGB07325.1 JX000007_p2 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1025 3676
AGB07344.1 JX000007_p21 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 12030 14144
AGB07358.1 JX000007_p35 tail tubular protein B phrog_457 tail protein tail 1 22085 24469
AGB07328.1 JX000007_p5 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4333 5355
AGB07349.1 JX000007_p26 hypothetical protein phrog_11345 unknown function unknown function 1 15704 15787
AGB07371.1 JX000007_p48 hypothetical protein phrog_2193 unknown function unknown function 1 36726 36875
AGB07334.1 JX000007_p11 truncated host bacteria RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6584 6766
AGB07355.1 JX000007_p33 major capsid protein phrog_267 major head protein head and packaging 1 20213 21247
AGB07364.1 JX000007_p41 holin phrog_920 holin lysis 1 33599 33802
AGB07342.1 JX000007_p19 hypothetical protein phrog_2254 unknown function unknown function 1 11261 11530
AGB07354.1 JX000007_p31 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 17488 19137
AGB07341.1 JX000007_p18 hypothetical protein phrog_1950 unknown function unknown function 1 11029 11241
AGB07363.1 JX000007_p40 tail fiber protein phrog_4242 tail fiber protein tail 1 31864 33540
AGB07348.1 JX000007_p25 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14814 15716
AGB07337.1 JX000007_p14 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7994 8452
AGB07352.1 JX000007_p29 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 16843 17082
AGB07362.1 JX000007_p39 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 27838 31791