| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX000007 |
Definition |
Yersinia phage R, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; unclassified Teseptimavirus. |
DB of origin |
PVOG |
Length |
37260 |
Host Name |
Yersinia pestis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
48.36 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGB07370.1 | JX000007_p47 | hypothetical protein | phrog_8173 | unknown function | unknown function | 1 | 35806 | 35979 |
| AGB07361.1 | JX000007_p38 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 25568 | 27811 |
| AGB07343.1 | JX000007_p20 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 11604 | 12011 |
| AGB07329.1 | JX000007_p6 | hypothetical protein | phrog_12128 | unknown function | unknown function | 1 | 5423 | 5512 |
| AGB07338.1 | JX000007_p15 | lysozyme | phrog_822 | amidase | lysis | 1 | 8424 | 8879 |
| AGB07333.1 | JX000007_p10 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 6430 | 6582 |
| AGB07368.1 | JX000007_p45 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 34623 | 36467 |
| AGB07332.1 | JX000007_p9 | hypothetical protein | phrog_3106 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6009 | 6479 |
| AGB07357.1 | JX000007_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 21474 | 22064 |
| AGB07327.1 | JX000007_p4 | host dGTPase inhibitor | phrog_2949 | dGTPase inhibitor; target for F exclusion | other | 1 | 3994 | 4251 |
| AGB07366.1 | JX000007_p43 | phage lambda Rz-like lysis protein | phrog_1327 | Rz-like spanin | lysis | 1 | 34170 | 34613 |
| AGB07331.1 | JX000007_p8 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 5798 | 6028 |
| AGB07336.1 | JX000007_p13 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7542 | 7997 |
| AGB07359.1 | JX000007_p36 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 24550 | 24966 |
| AGB07347.1 | JX000007_p24 | host recBCD nuclease inhibitor | phrog_9014 | Gp5.9-like inihibitor of recBCD nuclease | moron, auxiliary metabolic gene and host takeover | 1 | 14669 | 14827 |
| AGB07339.1 | JX000007_p16 | HNH endonuclease | phrog_4578 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8943 | 9308 |
| AGB07360.1 | JX000007_p37 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 24971 | 25561 |
| AGB07369.1 | JX000007_p46 | hypothetical protein | phrog_8982 | unknown function | unknown function | 1 | 35269 | 35502 |
| AGB07346.1 | JX000007_p23 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 14460 | 14669 |
| AGB07324.1 | JX000007_p1 | ocr DNA mimic protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 532 | 954 |
| AGB07326.1 | JX000007_p3 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 3861 | 3992 |
| AGB07340.1 | JX000007_p17 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 9283 | 10983 |
| AGB07335.1 | JX000007_p12 | single-stranded DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 6843 | 7541 |
| AGB07353.1 | JX000007_p30 | head-to-tail joining protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17096 | 17488 |
| AGB07351.1 | JX000007_p28 | host range protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16438 | 16839 |
| AGB07345.1 | JX000007_p22 | host H-NS-interacting protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 14164 | 14460 |
| AGB07365.1 | JX000007_p42 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 33807 | 34076 |
| AGB07367.1 | JX000007_p44 | Rz1-like lysis protein | phrog_4306 | Rz-like spanin | lysis | 1 | 34285 | 34536 |
| AGB07350.1 | JX000007_p27 | internal head protein | phrog_1391 | unknown function | unknown function | 1 | 16172 | 16438 |
| AGB07356.1 | JX000007_p32 | minor capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20213 | 21405 |
| AGB07330.1 | JX000007_p7 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 5538 | 5798 |
| AGB07325.1 | JX000007_p2 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1025 | 3676 |
| AGB07344.1 | JX000007_p21 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 12030 | 14144 |
| AGB07358.1 | JX000007_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 22085 | 24469 |
| AGB07328.1 | JX000007_p5 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4333 | 5355 |
| AGB07349.1 | JX000007_p26 | hypothetical protein | phrog_11345 | unknown function | unknown function | 1 | 15704 | 15787 |
| AGB07371.1 | JX000007_p48 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 36726 | 36875 |
| AGB07334.1 | JX000007_p11 | truncated host bacteria RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 6584 | 6766 |
| AGB07355.1 | JX000007_p33 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 20213 | 21247 |
| AGB07364.1 | JX000007_p41 | holin | phrog_920 | holin | lysis | 1 | 33599 | 33802 |
| AGB07342.1 | JX000007_p19 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 11261 | 11530 |
| AGB07354.1 | JX000007_p31 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 17488 | 19137 |
| AGB07341.1 | JX000007_p18 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 11029 | 11241 |
| AGB07363.1 | JX000007_p40 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 31864 | 33540 |
| AGB07348.1 | JX000007_p25 | exodeoxyribonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14814 | 15716 |
| AGB07337.1 | JX000007_p14 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7994 | 8452 |
| AGB07352.1 | JX000007_p29 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 16843 | 17082 |
| AGB07362.1 | JX000007_p39 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 27838 | 31791 |