| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX006077 |
Definition |
Saccharomonospora phage PIS 136, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
94870 |
Host Name |
Saccharomonospora |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
132 |
%GC |
65.88 |
Number of singletons |
93 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFM10416.1 | JX006077_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28895 | 29056 |
| AFM10473.1 | JX006077_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61154 | 61363 |
| AFM10488.1 | JX006077_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 72479 | 72799 |
| AFM10420.1 | JX006077_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30675 | 30806 |
| AFM10479.1 | JX006077_p90 | transposase | phrog_506 | transposase | integration and excision | 1 | 64095 | 65081 |
| AFM10494.1 | JX006077_p105 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75540 | 75770 |
| AFM10452.1 | JX006077_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48478 | 48705 |
| AFM10495.1 | JX006077_p106 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75772 | 75939 |
| AFM10429.1 | JX006077_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34821 | 35813 |
| AFM10411.1 | JX006077_p22 | hypothetical protein | phrog_859 | portal protein | head and packaging | -1 | 21466 | 24219 |
| AFM10506.1 | JX006077_p119 | hypothetical protein | phrog_10815 | unknown function | unknown function | -1 | 87284 | 87472 |
| AFM10493.1 | JX006077_p104 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75427 | 75567 |
| AFM10427.1 | JX006077_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33660 | 33935 |
| AFM10466.1 | JX006077_p77 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 55665 | 57068 |
| AFM10491.1 | JX006077_p102 | hypothetical protein | phrog_1366 | unknown function | unknown function | 1 | 74226 | 75098 |
| AFM10484.1 | JX006077_p95 | transcriptional regulator | singleton | unknown function | unknown function | -1 | 69929 | 70045 |
| AFM10486.1 | JX006077_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70580 | 71176 |
| AFM10515.1 | JX006077_p128 | hypothetical protein | singleton | unknown function | unknown function | 1 | 92046 | 92699 |
| AFM10407.1 | JX006077_p18 | Epstein-Barr nuclear antigen 1 | phrog_779 | unknown function | unknown function | -1 | 18274 | 19128 |
| AFM10408.1 | JX006077_p19 | hypothetical protein | phrog_777 | major head protein | head and packaging | -1 | 19243 | 21045 |
| AFM10406.1 | JX006077_p17 | Pas16 | phrog_792 | major tail protein | tail | -1 | 17541 | 18263 |
| AFM10472.1 | JX006077_p83 | DNA polymerase III epsilon subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60447 | 61157 |
| AFM10508.1 | JX006077_p121 | hypothetical protein | singleton | unknown function | unknown function | 1 | 88451 | 88738 |
| AFM10414.1 | JX006077_p25 | hypothetical protein | phrog_38 | terminase large subunit | head and packaging | -1 | 26674 | 28074 |
| AFM10440.1 | JX006077_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42303 | 43130 |
| AFM10502.1 | JX006077_p115 | hypothetical protein | phrog_9961 | unknown function | unknown function | -1 | 84628 | 84873 |
| AFM10505.1 | JX006077_p118 | protein-L-isoaspartate carboxylmethyltransferase | singleton | unknown function | unknown function | -1 | 86694 | 87173 |
| AFM10391.1 | JX006077_p2 | hypothetical protein | phrog_18824 | unknown function | unknown function | -1 | 1080 | 3905 |
| AFM10395.1 | JX006077_p6 | hypothetical protein | phrog_838 | unknown function | unknown function | -1 | 5724 | 7040 |
| AFM10478.1 | JX006077_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 63908 | 64501 |
| AFM10401.1 | JX006077_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13975 | 15339 |
| AFM10438.1 | JX006077_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42148 | 42303 |
| AFM10441.1 | JX006077_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43127 | 43405 |
| AFM10424.1 | JX006077_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32215 | 33123 |
| AFM10457.1 | JX006077_p68 | hypothetical protein | phrog_14658 | unknown function | unknown function | -1 | 50641 | 50973 |
| AFM10437.1 | JX006077_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41968 | 42252 |
| AFM10419.1 | JX006077_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29951 | 30064 |
| AFM10482.1 | JX006077_p93 | DEAD-like helicase superfamily protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 67475 | 69199 |
| AFM10496.1 | JX006077_p107 | endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 76408 | 76758 |
| AFM10511.1 | JX006077_p124 | L-aspartate dehydrogenase | singleton | unknown function | unknown function | 1 | 89371 | 89943 |
| AFM10422.1 | JX006077_p33 | hypothetical protein | phrog_3849 | unknown function | unknown function | -1 | 31346 | 31744 |
| AFM10431.1 | JX006077_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37673 | 37825 |
| AFM10396.1 | JX006077_p7 | hypothetical protein | phrog_305 | tail length tape measure protein | tail | -1 | 7044 | 9764 |
| AFM10456.1 | JX006077_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50324 | 50554 |
| AFM10436.1 | JX006077_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41560 | 41775 |
| AFM10447.1 | JX006077_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46338 | 46598 |
| AFM10434.1 | JX006077_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38307 | 39758 |
| AFM10425.1 | JX006077_p36 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | -1 | 32907 | 33155 |
| AFM10480.1 | JX006077_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65443 | 65646 |
| AFM10405.1 | JX006077_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17337 | 18140 |
| AFM10410.1 | JX006077_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21281 | 21463 |
| AFM10517.1 | JX006077_p130 | hypothetical protein | singleton | unknown function | unknown function | -1 | 93238 | 93522 |
| AFM10448.1 | JX006077_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46673 | 46876 |
| AFM10413.1 | JX006077_p24 | hypothetical protein | phrog_781 | unknown function | unknown function | -1 | 26252 | 26611 |
| AFM10462.1 | JX006077_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53074 | 53448 |
| AFM10461.1 | JX006077_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52599 | 53048 |
| AFM10453.1 | JX006077_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48812 | 49504 |
| AFM10459.1 | JX006077_p70 | polysaccharide biosynthesis protein CpsM (V) | singleton | unknown function | unknown function | 1 | 51755 | 52051 |
| AFM10463.1 | JX006077_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53106 | 53513 |
| AFM10474.1 | JX006077_p85 | inorganic pyrophosphatase | singleton | unknown function | unknown function | 1 | 61376 | 62227 |
| AFM10460.1 | JX006077_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52139 | 52906 |
| AFM10443.1 | JX006077_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43787 | 44086 |
| AFM10465.1 | JX006077_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55499 | 55654 |
| AFM10421.1 | JX006077_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30896 | 31153 |
| AFM10393.1 | JX006077_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4230 | 4529 |
| AFM10516.1 | JX006077_p129 | hypothetical protein | singleton | unknown function | unknown function | 1 | 92926 | 93048 |
| AFM10509.1 | JX006077_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 88594 | 88914 |
| AFM10409.1 | JX006077_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20573 | 21109 |
| AFM10450.1 | JX006077_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47843 | 48280 |
| AFM10490.1 | JX006077_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73967 | 74257 |
| AFM10446.1 | JX006077_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45928 | 46263 |
| AFM10398.1 | JX006077_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 11009 | 11428 |
| AFM10418.1 | JX006077_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29543 | 29857 |
| AFM10487.1 | JX006077_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71638 | 72159 |
| AFM10423.1 | JX006077_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31744 | 31848 |
| AFM10477.1 | JX006077_p88 | ISHa1942 transposase A-like protein | phrog_2577 | transposase | integration and excision | -1 | 63406 | 63825 |
| AFM10444.1 | JX006077_p55 | transposase-like protein | phrog_2577 | transposase | integration and excision | 1 | 44385 | 44783 |
| AFM10471.1 | JX006077_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60315 | 60887 |
| AAM21921.1 | JX006077_p111 | integrase | phrog_1 | integrase | integration and excision | 1 | 78908 | 80128 |
| AFM10428.1 | JX006077_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33968 | 35002 |
| AFM10467.1 | JX006077_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57152 | 57553 |
| AFM10451.1 | JX006077_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47870 | 48478 |
| AFM10476.1 | JX006077_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62984 | 63277 |
| AFM10504.1 | JX006077_p117 | protein-L-isoaspartate methyltransferase | singleton | unknown function | unknown function | -1 | 86452 | 86586 |
| AFM10492.1 | JX006077_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75233 | 75430 |
| AFM10404.1 | JX006077_p15 | ExsB | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 16734 | 17420 |
| AFM10469.1 | JX006077_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58964 | 59236 |
| AFM10435.1 | JX006077_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41059 | 41538 |
| AFM10481.1 | JX006077_p92 | hypothetical protein | phrog_5931 | unknown function | unknown function | 1 | 66554 | 67255 |
| AFM10394.1 | JX006077_p5 | PE-PGRS family protein | phrog_837 | minor tail protein | tail | -1 | 4675 | 5724 |
| AFM10455.1 | JX006077_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49641 | 50267 |
| AFM10430.1 | JX006077_p41 | FtsK Spo IIIE protein | singleton | unknown function | unknown function | -1 | 35115 | 37676 |
| AFM10499.1 | JX006077_p110 | deoxycytidine triphosphate deaminase | singleton | unknown function | unknown function | -1 | 78575 | 78775 |
| AFM10417.1 | JX006077_p28 | integration host factor MihF | singleton | unknown function | unknown function | 1 | 29065 | 29478 |
| AFM10433.1 | JX006077_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38102 | 38884 |
| AFM10390.1 | JX006077_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 596 | 1075 |
| AFM10507.1 | JX006077_p120 | helix-turn-helix domain protein | phrog_9908 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 87469 | 88317 |
| AFM10510.1 | JX006077_p123 | hypothetical protein | singleton | unknown function | unknown function | 1 | 88911 | 89129 |
| AFM10483.1 | JX006077_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69340 | 69804 |
| AFM10432.1 | JX006077_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37785 | 38171 |
| AFM10426.1 | JX006077_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33260 | 33463 |
| AFM10458.1 | JX006077_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 51056 | 51505 |
| AFM10454.1 | JX006077_p65 | membrane bound metal dependent hydrolase | phrog_20744 | hydrolase | other | 1 | 49504 | 50253 |
| AFM10475.1 | JX006077_p86 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62436 | 62735 |
| AFM10512.1 | JX006077_p125 | hypothetical protein | singleton | unknown function | unknown function | -1 | 90240 | 90791 |
| AFM10464.1 | JX006077_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55026 | 55346 |
| AFM10392.1 | JX006077_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4086 | 4358 |
| AFM10439.1 | JX006077_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42252 | 42797 |
| AFM10519.1 | JX006077_p132 | hypothetical protein | singleton | unknown function | unknown function | -1 | 93918 | 94715 |
| AFM10498.1 | JX006077_p109 | deoxycytidine triphosphate deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 77938 | 78519 |
| AFM10449.1 | JX006077_p60 | hypothetical protein | phrog_1198 | MutT/NUDIX hydrolase | other | 1 | 47043 | 47393 |
| AFM10501.1 | JX006077_p114 | hypothetical protein | singleton | unknown function | unknown function | 1 | 84330 | 84578 |
| AFM10399.1 | JX006077_p10 | hypothetical protein | phrog_783 | head-tail adaptor | connector | -1 | 11977 | 12792 |
| AFM10518.1 | JX006077_p131 | hypothetical protein | singleton | unknown function | unknown function | -1 | 93589 | 93921 |
| AFM10489.1 | JX006077_p100 | phage type endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 72966 | 73970 |
| AFM10497.1 | JX006077_p108 | VRR-NUC domain containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 76890 | 77222 |
| AFM10503.1 | JX006077_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 85260 | 85589 |
| AFM10468.1 | JX006077_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57553 | 58965 |
| AFM10397.1 | JX006077_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9862 | 11148 |
| AFM10400.1 | JX006077_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13204 | 13920 |
| AFM10415.1 | JX006077_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28266 | 28769 |
| AFM10445.1 | JX006077_p56 | IS891/IS1136/IS1341 family transposase | phrog_506 | transposase | integration and excision | 1 | 44799 | 46016 |
| AFM10470.1 | JX006077_p81 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 59233 | 60438 |
| AFM10412.1 | JX006077_p23 | Pas4 | phrog_776 | portal protein | head and packaging | -1 | 24212 | 26086 |
| AFM10513.1 | JX006077_p126 | hypothetical protein | singleton | unknown function | unknown function | -1 | 90792 | 91076 |
| AFM10442.1 | JX006077_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43464 | 43730 |
| AFM10514.1 | JX006077_p127 | protoporphyrin IX magnesium chelatase subunit chl I | singleton | unknown function | unknown function | -1 | 91093 | 91824 |
| AAL66178.2 | JX006077_p112 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 80528 | 84244 |
| AFM10403.1 | JX006077_p14 | cyanophycin synthetase | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | -1 | 15985 | 16734 |
| AFM10500.1 | JX006077_p113 | Na+/proline symporter | singleton | unknown function | unknown function | -1 | 81185 | 84331 |
| AFM10402.1 | JX006077_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15406 | 15747 |
| AFM10485.1 | JX006077_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70282 | 70569 |