| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX042579 |
Definition |
Mycobacterium virus MacnCheese, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus. |
DB of origin |
PVOG |
Length |
61567 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
67.28 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFN37779.1 | JX042579_p91 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 57089 | 57346 |
| AFN37743.1 | JX042579_p52 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37944 | 38117 |
| AFN37778.1 | JX042579_p90 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 56613 | 56876 |
| AFN37736.1 | JX042579_p42 | queuine tRNA-ribosyltransferase | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31958 | 32809 |
| AFN37782.1 | JX042579_p94 | hypothetical protein | phrog_15500 | unknown function | unknown function | 1 | 57896 | 58729 |
| AFN37734.1 | JX042579_p40 | hypothetical protein | phrog_11692 | unknown function | unknown function | 1 | 31432 | 31587 |
| AFN37751.1 | JX042579_p60 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 41385 | 41663 |
| AFN37790.1 | JX042579_p43 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32856 | 33155 |
| AFN37718.1 | JX042579_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17821 | 19584 |
| AFN37730.1 | JX042579_p36 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29261 | 30394 |
| AFN37797.1 | JX042579_p7 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1483 | 1710 |
| AFN37780.1 | JX042579_p92 | hypothetical protein | phrog_12202 | unknown function | unknown function | 1 | 57346 | 57468 |
| AFN37739.1 | JX042579_p48 | hypothetical protein | phrog_20078 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36927 | 37046 |
| AFN37811.1 | JX042579_p70 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 44725 | 44967 |
| AFN37799.1 | JX042579_p9 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 3139 | 4695 |
| AFN37728.1 | JX042579_p33 | holin | phrog_565 | holin | lysis | 1 | 28230 | 28682 |
| AFN37724.1 | JX042579_p29 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 24319 | 25308 |
| AFN37770.1 | JX042579_p82 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 52664 | 53080 |
| AFN37758.1 | JX042579_p67 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 43739 | 43909 |
| AFN37809.1 | JX042579_p68 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43909 | 44025 |
| AFN37714.1 | JX042579_p20 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11578 | 12018 |
| AFN37806.1 | JX042579_p16 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9932 | 10216 |
| AFN37727.1 | JX042579_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27431 | 28219 |
| AFN37767.1 | JX042579_p79 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 51340 | 51573 |
| AFN37753.1 | JX042579_p62 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41974 | 42873 |
| AFN37800.1 | JX042579_p10 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4634 | 7237 |
| AFN37762.1 | JX042579_p74 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 49002 | 49445 |
| AFN37750.1 | JX042579_p59 | DnaQ-like protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 40831 | 41388 |
| AFN37786.1 | JX042579_p98 | hypothetical protein | phrog_15061 | unknown function | unknown function | 1 | 60697 | 61212 |
| AFN37798.1 | JX042579_p8 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1694 | 3127 |
| AFN37772.1 | JX042579_p84 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 54056 | 54445 |
| AFN37805.1 | JX042579_p15 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9598 | 9951 |
| AFN37729.1 | JX042579_p34 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 28679 | 29026 |
| AFN37796.1 | JX042579_p6 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1298 | 1483 |
| AFN37810.1 | JX042579_p69 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 44105 | 44629 |
| AFN37784.1 | JX042579_p96 | hypothetical protein | phrog_4095 | unknown function | unknown function | 1 | 59356 | 60054 |
| AFN37754.1 | JX042579_p63 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42870 | 43046 |
| AFN37748.1 | JX042579_p57 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 40122 | 40535 |
| AFN37747.1 | JX042579_p56 | WhiB | phrog_2781 | unknown function | unknown function | 1 | 39191 | 40129 |
| AFN37768.1 | JX042579_p80 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 51630 | 51839 |
| AFN37749.1 | JX042579_p58 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 40525 | 40812 |
| AFN37794.1 | JX042579_p4 | hypothetical protein | phrog_14141 | unknown function | unknown function | 1 | 643 | 783 |
| AFN37716.1 | JX042579_p21 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 12433 | 16590 |
| AFN37783.1 | JX042579_p95 | hypothetical protein | phrog_4631 | unknown function | unknown function | 1 | 58839 | 59138 |
| AFN37777.1 | JX042579_p89 | hypothetical protein | phrog_15782 | unknown function | unknown function | 1 | 56308 | 56616 |
| AFN37789.1 | JX042579_p46 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 35237 | 36148 |
| AFN37774.1 | JX042579_p86 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 54969 | 55178 |
| AFN37745.1 | JX042579_p54 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 38254 | 38931 |
| AFN37781.1 | JX042579_p93 | hypothetical protein | phrog_20958 | unknown function | unknown function | 1 | 57608 | 57784 |
| AFN37752.1 | JX042579_p61 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 41660 | 41977 |
| AFN37723.1 | JX042579_p28 | hypothetical protein | phrog_3901 | unknown function | unknown function | 1 | 24002 | 24319 |
| AFN37776.1 | JX042579_p88 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 55739 | 56311 |
| AFN37792.1 | JX042579_p2 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 194 | 415 |
| AFN37803.1 | JX042579_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 8170 | 9093 |
| AFN37766.1 | JX042579_p78 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50941 | 51216 |
| AFN37804.1 | JX042579_p14 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 9215 | 9598 |
| AFN37731.1 | JX042579_p37 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 30394 | 30618 |
| AFN37795.1 | JX042579_p5 | hypothetical protein | phrog_19409 | unknown function | unknown function | 1 | 867 | 1223 |
| AFN37721.1 | JX042579_p26 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 21248 | 21556 |
| AFN37713.1 | JX042579_p18 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10792 | 11403 |
| AFN37788.1 | JX042579_p47 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 36177 | 36557 |
| AFN37740.1 | JX042579_p49 | HTH DNA binding domain protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37043 | 37276 |
| AFN37741.1 | JX042579_p50 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 37267 | 37638 |
| AFN37808.1 | JX042579_p35 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 29023 | 29301 |
| AFN37746.1 | JX042579_p55 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38928 | 39194 |
| AFN37744.1 | JX042579_p53 | hypothetical protein | phrog_17160 | unknown function | unknown function | 1 | 38114 | 38257 |
| AFN37715.1 | JX042579_p19 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11578 | 12428 |
| AFN37793.1 | JX042579_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 412 | 585 |
| AFN37738.1 | JX042579_p45 | hypothetical protein | phrog_8155 | unknown function | unknown function | 1 | 34843 | 35163 |
| AFN37771.1 | JX042579_p83 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 53175 | 54059 |
| AFN37769.1 | JX042579_p81 | SprT-like protein | phrog_1006 | unknown function | unknown function | 1 | 51963 | 52529 |
| AFN37759.1 | JX042579_p71 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44967 | 45302 |
| AFN37719.1 | JX042579_p24 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 19584 | 20096 |
| AFN37791.1 | JX042579_p1 | hypothetical protein | phrog_5391 | unknown function | unknown function | 1 | 51 | 197 |
| AFN37732.1 | JX042579_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30660 | 30839 |
| AFN37757.1 | JX042579_p66 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 43527 | 43739 |
| AFN37801.1 | JX042579_p11 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7234 | 7437 |
| AFN37735.1 | JX042579_p41 | hypothetical protein | phrog_9364 | unknown function | unknown function | 1 | 31639 | 31827 |
| AFN37717.1 | JX042579_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16685 | 17821 |
| AFN37763.1 | JX042579_p75 | hypothetical protein | phrog_15207 | unknown function | unknown function | 1 | 49442 | 49606 |
| AFN37787.1 | JX042579_p99 | HNH endonuclease domain protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61214 | 61501 |
| AFN37785.1 | JX042579_p97 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 60456 | 60683 |
| AFN37722.1 | JX042579_p27 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 21549 | 24002 |
| AFN37725.1 | JX042579_p30 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 25401 | 25757 |
| AFN37733.1 | JX042579_p39 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31034 | 31432 |
| AFN37755.1 | JX042579_p64 | hypothetical protein | phrog_8427 | unknown function | unknown function | 1 | 43048 | 43242 |
| AFN37756.1 | JX042579_p65 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 43252 | 43530 |
| AFN37807.1 | JX042579_p17 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 10213 | 10644 |
| AFN37720.1 | JX042579_p25 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 20145 | 21233 |
| AFN37760.1 | JX042579_p72 | DNA primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 45341 | 47941 |
| AFN37802.1 | JX042579_p12 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7513 | 8091 |
| AFN37761.1 | JX042579_p73 | RusA-like protein | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48347 | 49009 |
| AFN37764.1 | JX042579_p76 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49599 | 50501 |
| AFN37737.1 | JX042579_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 33533 | 34810 |
| AFN37742.1 | JX042579_p51 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 37711 | 37947 |
| AFN37775.1 | JX042579_p87 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55279 | 55746 |
| AFN37773.1 | JX042579_p85 | hypothetical protein | phrog_14052 | unknown function | unknown function | 1 | 54442 | 54975 |
| AFN37765.1 | JX042579_p77 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 50498 | 50944 |
| AFN37726.1 | JX042579_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 25776 | 27434 |