Genomic map of Salmonella phage wksl3 (JX202565)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX202565
Definition
Salmonella phage wksl3, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus wksl3.
DB of origin
PVOG
Length
42633
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
49.79
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFO12397.1 JX202565_p61 hypothetical protein phrog_206 head scaffolding protein head and packaging -1 39257 39958
AFO12358.1 JX202565_p22 hypothetical protein phrog_9384 unknown function unknown function -1 8715 8879
AFO12389.1 JX202565_p53 tail protein phrog_169 tail completion or Neck1 protein connector -1 35400 35795
AFO12361.1 JX202565_p25 replicative helicase-primase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 10208 12394
AFO12367.1 JX202565_p31 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 15143 15772
AFO12338.1 JX202565_p2 structural protein phrog_145 portal protein head and packaging -1 590 2065
AFO12363.1 JX202565_p27 hypothetical protein phrog_3127 unknown function unknown function 1 12762 13274
AFO12352.1 JX202565_p16 hypothetical protein phrog_2359 holin lysis -1 6578 6859
AFO12340.1 JX202565_p4 terminase small subunit phrog_3064 terminase head and packaging -1 3339 3845
AFO12343.1 JX202565_p7 hypothetical protein phrog_2531 unknown function unknown function -1 4245 4547
AFO12344.1 JX202565_p8 hypothetical protein phrog_268 unknown function unknown function -1 4547 4771
AFO12362.1 JX202565_p26 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 12386 12628
AFO12359.1 JX202565_p23 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 9736 9921
AFO12378.1 JX202565_p42 hypothetical protein phrog_384 virion structural protein head and packaging -1 27064 27564
AFO12357.1 JX202565_p21 hypothetical protein phrog_29113 unknown function unknown function -1 8539 8652
AFO12393.1 JX202565_p57 hypothetical protein phrog_4451 unknown function unknown function -1 37272 37460
AFO12383.1 JX202565_p47 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 31085 32203
AFO12391.1 JX202565_p55 hypothetical protein phrog_3614 unknown function unknown function -1 36151 36756
AFO12372.1 JX202565_p36 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 18772 21237
AFO12396.1 JX202565_p60 coat protein phrog_247 major head protein head and packaging -1 38204 39253
AFO12392.1 JX202565_p56 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 36759 37268
AFO12348.1 JX202565_p12 hypothetical protein phrog_3002 unknown function unknown function -1 5293 5451
AFO12365.1 JX202565_p29 hypothetical protein phrog_4965 unknown function unknown function 1 13518 13790
AFO12364.1 JX202565_p28 hypothetical protein phrog_8602 unknown function unknown function 1 13318 13521
AFO12346.1 JX202565_p10 hypothetical protein phrog_1402 unknown function unknown function -1 4914 5144
AFO12355.1 JX202565_p19 hypothetical protein phrog_3766 unknown function unknown function -1 7741 7944
AFO12380.1 JX202565_p44 hypothetical protein phrog_4557 unknown function unknown function -1 29892 30251
AFO12390.1 JX202565_p54 tail protein phrog_161 head closure Hc1 connector -1 35792 36151
AFO12375.1 JX202565_p39 tail protein phrog_469 tail protein tail -1 23641 26127
AFO12382.1 JX202565_p46 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 30843 31022
AFO12395.1 JX202565_p59 head protein phrog_4366 head fiber protein head and packaging -1 37859 38143
AFO12371.1 JX202565_p35 hypothetical protein phrog_4879 unknown function unknown function 1 18584 18775
AFO12345.1 JX202565_p9 hypothetical protein phrog_10200 unknown function unknown function -1 4768 4917
AFO12337.1 JX202565_p1 amidase phrog_6095 amidase lysis 1 42539 42633
AFO12337.1 JX202565_p1 amidase phrog_6095 amidase lysis 1 1 559
AFO12354.1 JX202565_p18 hypothetical protein phrog_4947 unknown function unknown function -1 7379 7744
AFO12341.1 JX202565_p5 hypothetical protein phrog_18319 unknown function unknown function -1 3874 4005
AFO12349.1 JX202565_p13 hypothetical protein phrog_2180 unknown function unknown function -1 5448 5633
AFO12400.1 JX202565_p64 head morphogenesis protein phrog_241 head morphogenesis head and packaging -1 41317 42360
AFO12386.1 JX202565_p50 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation 1 33112 33783
AFO12373.1 JX202565_p37 hypothetical protein phrog_13851 unknown function unknown function 1 21234 21455
AFO12376.1 JX202565_p40 hypothetical protein phrog_329 minor tail protein tail -1 26190 26453
AFO12350.1 JX202565_p14 lysozyme phrog_7 endolysin lysis -1 5820 6308
AFO12381.1 JX202565_p45 hypothetical protein phrog_313 Tail assembly chaperone tail -1 30257 30673
AFO12370.1 JX202565_p34 restriction-endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 18268 18552
AFO12374.1 JX202565_p38 tailspike protein phrog_1819 tail spike protein tail -1 21574 23604
AFO12385.1 JX202565_p49 hypothetical protein singleton unknown function unknown function 1 32766 32951
AFO12342.1 JX202565_p6 hypothetical protein phrog_28764 unknown function unknown function -1 4141 4248
AFO12366.1 JX202565_p30 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 13787 15061
AFO12368.1 JX202565_p32 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15830 18031
AFO12356.1 JX202565_p20 hypothetical protein phrog_6094 unknown function unknown function -1 7941 8546
AFO12384.1 JX202565_p48 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 32256 32756
AFO12379.1 JX202565_p43 tape measure protein phrog_1538 tail length tape measure protein tail -1 27566 29899
AFO12347.1 JX202565_p11 hypothetical protein phrog_4684 unknown function unknown function -1 5141 5311
AFO12388.1 JX202565_p52 hypothetical protein phrog_179 tail terminator connector -1 34981 35400
AFO12339.1 JX202565_p3 terminase phrog_2 terminase large subunit head and packaging -1 2078 3349
AFO12353.1 JX202565_p17 hypothetical protein phrog_1040 peptidase HslV family other -1 6939 7373
AFO12369.1 JX202565_p33 hypothetical protein phrog_14925 unknown function unknown function 1 18119 18271
AFO12351.1 JX202565_p15 holin phrog_2508 holin lysis -1 6286 6576
AFO12377.1 JX202565_p41 hypothetical protein phrog_396 minor tail protein tail -1 26552 27067
AFO12360.1 JX202565_p24 hypothetical protein phrog_5169 unknown function unknown function 1 9918 10151
AFO12387.1 JX202565_p51 tail protein phrog_290 minor tail protein tail -1 33812 34981
AFO12399.1 JX202565_p63 tail protein phrog_3945 Hoc-like head decoration head and packaging -1 40856 41314
AFO12394.1 JX202565_p58 tail protein phrog_4069 Hoc-like head decoration head and packaging -1 37497 37847
AFO12398.1 JX202565_p62 hypothetical protein phrog_2536 Rz-like spanin lysis -1 40149 40538