Genomic map of Staphylococcus phage SP5 (JX274646)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX274646
Definition
Staphylococcus phage SP5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
PVOG
Length
43305
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
34.44
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFQ96869.1 JX274646_p61 hypothetical protein phrog_1262 unknown function unknown function 1 40445 40840
AFQ96853.1 JX274646_p45 hypothetical protein phrog_348 minor head protein head and packaging 1 23781 24083
AFQ96821.1 JX274646_p13 hypothetical protein phrog_2527 unknown function unknown function 1 6572 6835
AFQ96844.1 JX274646_p36 terminase small subunit phrog_51 terminase small subunit head and packaging 1 16919 17359
AFQ96832.1 JX274646_p24 hypothetical protein phrog_1034 unknown function unknown function 1 13483 13767
AFQ96818.1 JX274646_p10 hypothetical protein phrog_369 unknown function unknown function 1 5721 5888
AFQ96856.1 JX274646_p48 major tail protein phrog_238 major tail protein tail 1 24844 25425
AFQ96839.1 JX274646_p31 hypothetical protein phrog_555 unknown function unknown function 1 15354 15590
AFQ96816.1 JX274646_p8 hypothetical protein phrog_2312 unknown function unknown function 1 5160 5336
AFQ96847.1 JX274646_p39 SPP1 family phage head morphogenesis protein phrog_115 minor head protein head and packaging 1 20179 21174
AFQ96845.1 JX274646_p37 terminase large subunit phrog_2 terminase large subunit head and packaging 1 17346 18623
AFQ96863.1 JX274646_p55 hypothetical protein phrog_257 minor tail protein tail 1 34502 36325
AFQ96848.1 JX274646_p40 hypothetical protein phrog_1431 unknown function unknown function 1 21247 21417
AFQ96827.1 JX274646_p19 hypothetical protein phrog_433 unknown function unknown function 1 11802 12020
AFQ96814.1 JX274646_p6 antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 4145 4897
AFQ96841.1 JX274646_p33 integrase regulator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 15966 16139
AFQ96817.1 JX274646_p9 hypothetical protein phrog_3785 unknown function unknown function 1 5591 5728
AFQ96831.1 JX274646_p23 hypothetical protein phrog_467 unknown function unknown function 1 13085 13486
AFQ96870.1 JX274646_p62 holin phrog_962 holin lysis 1 40896 41333
AFQ96862.1 JX274646_p54 major teichoic acid biosynthesis protein phrog_287 minor tail protein tail 1 32592 34502
AFQ96823.1 JX274646_p15 recombination protein RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8789 9709
AFQ96809.1 JX274646_p1 integrase phrog_95 integrase integration and excision -1 32 1417
AFQ96855.1 JX274646_p47 hypothetical protein phrog_176 tail terminator connector 1 24442 24825
AFQ96850.1 JX274646_p42 major capsid protein phrog_10 major head protein head and packaging 1 22160 23134
AFQ96865.1 JX274646_p57 hypothetical protein phrog_134 unknown function unknown function 1 36703 36879
AFQ96819.1 JX274646_p11 hypothetical protein phrog_9362 unknown function unknown function 1 5889 6209
AFQ96843.1 JX274646_p35 transcriptional activator RinA phrog_36 transcriptional regulator transcription regulation 1 16310 16732
AFQ96868.1 JX274646_p60 tail fiber phrog_1125 tail fiber protein tail 1 39267 40439
AFQ96837.1 JX274646_p29 hypothetical protein phrog_1122 unknown function unknown function 1 14967 15161
AFQ96836.1 JX274646_p28 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 14764 14970
AFQ96835.1 JX274646_p27 hypothetical protein phrog_3521 unknown function unknown function 1 14574 14747
AFQ96866.1 JX274646_p58 hypothetical protein phrog_276 unknown function unknown function 1 36920 37219
AFQ96846.1 JX274646_p38 SPP1 family portal protein phrog_64 portal protein head and packaging 1 18634 20172
AFQ96867.1 JX274646_p59 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase phrog_759 tail associated cell-wall hydrolase other 1 37356 39254
AFQ96810.1 JX274646_p2 hypothetical protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover -1 1624 2304
AFQ96812.1 JX274646_p4 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 3223 3435
AFQ96864.1 JX274646_p56 hypothetical protein phrog_300 tail fiber protein tail 1 36325 36702
AFQ96851.1 JX274646_p43 hypothetical protein phrog_390 Arc-like repressor transcription regulation 1 23156 23443
AFQ96857.1 JX274646_p49 hypothetical protein phrog_183 tail chaperone protein tail 1 25487 25852
AFQ96833.1 JX274646_p25 hypothetical protein phrog_266 unknown function unknown function 1 13760 14008
AFQ96860.1 JX274646_p52 minor tail protein phrog_33 distal tail protein Dit tail 1 29720 30667
AFQ96828.1 JX274646_p20 crossover junction endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 12029 12433
AFQ96826.1 JX274646_p18 regulatory protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 10908 11795
AFQ96830.1 JX274646_p22 hypothetical protein phrog_258 virulence associated other 1 12824 13072
AFQ96825.1 JX274646_p17 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 10408 10878
AFQ96829.1 JX274646_p21 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12446 12823
AFQ96824.1 JX274646_p16 hypothetical protein phrog_392 metal-dependent hydrolase other 1 9922 10407
AFQ96815.1 JX274646_p7 hypothetical protein phrog_845 unknown function unknown function 1 4913 5107
AFQ96811.1 JX274646_p3 cI-like repressor phrog_4 transcriptional repressor transcription regulation -1 2340 3071
AFQ96822.1 JX274646_p14 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 6844 8787
AFQ96820.1 JX274646_p12 hypothetical protein phrog_401 unknown function unknown function 1 6303 6563
AFQ96813.1 JX274646_p5 helix-turn-helix domain-containing protein phrog_3 transcriptional repressor transcription regulation 1 3958 4143
AFQ96852.1 JX274646_p44 DNA packaging protein phrog_132 head-tail adaptor connector 1 23452 23784
AFQ96854.1 JX274646_p46 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24083 24430
AFQ96840.1 JX274646_p32 hypothetical protein phrog_301 secreted protein other 1 15583 15966
AFQ96858.1 JX274646_p50 hypothetical protein phrog_441 tail assembly chaperone tail 1 25882 26226
AFQ96859.1 JX274646_p51 tape measure protein phrog_58 tail length tape measure protein tail 1 26243 29707
AFQ96849.1 JX274646_p41 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 21526 22146
AFQ96861.1 JX274646_p53 endopeptidase tail family protein phrog_663 minor head protein head and packaging 1 30676 32577
AFQ96834.1 JX274646_p26 dUTP diphosphatase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14001 14537
AFQ96871.1 JX274646_p63 N-acetylmuramoyl-L-alanine amidase phrog_635 endolysin lysis 1 41314 42759
AFQ96842.1 JX274646_p34 hypothetical protein phrog_1367 unknown function unknown function 1 16140 16286
AFQ96838.1 JX274646_p30 hypothetical protein phrog_1616 unknown function unknown function 1 15158 15361