| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX290549 |
Definition |
Pectobacterium phage PhiM1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Phimunavirus; Pectobacterium virus fM1. |
DB of origin |
NUCCORE |
Length |
43827 |
Host Name |
Pectobacterium atrosepticum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
49.18 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFQ22492.1 | JX290549_p7 | hypothetical protein | phrog_32621 | unknown function | unknown function | 1 | 3105 | 3284 |
| AFQ22505.1 | JX290549_p20 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11045 | 13387 |
| AFQ22500.1 | JX290549_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9586 | 9795 |
| AFQ22512.1 | JX290549_p27 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 16450 | 17424 |
| AFQ22503.1 | JX290549_p18 | hypothetical protein | phrog_15093 | unknown function | unknown function | 1 | 10339 | 10521 |
| AFQ22519.1 | JX290549_p34 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 21645 | 21947 |
| AFQ22507.1 | JX290549_p22 | DNA exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14256 | 15302 |
| AFQ22509.1 | JX290549_p24 | hypothetical protein | phrog_28780 | unknown function | unknown function | 1 | 15423 | 15668 |
| AFQ22499.1 | JX290549_p14 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8058 | 9320 |
| AFQ22501.1 | JX290549_p16 | hypothetical protein | phrog_22533 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9827 | 10054 |
| AFQ22518.1 | JX290549_p33 | hypothetical protein | phrog_5167 | unknown function | unknown function | 1 | 21215 | 21628 |
| AFQ22524.1 | JX290549_p39 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25955 | 26512 |
| AFQ22526.1 | JX290549_p41 | internal virion protein | phrog_4295 | internal virion protein | head and packaging | 1 | 28849 | 29463 |
| AFQ22536.1 | JX290549_p51 | endolysin | phrog_7 | endolysin | lysis | 1 | 41110 | 41715 |
| AFQ22508.1 | JX290549_p23 | hypothetical protein | phrog_36979 | unknown function | unknown function | 1 | 15169 | 15426 |
| AFQ22513.1 | JX290549_p28 | polynucleotide 5' kinase/3' phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 17535 | 17903 |
| AFQ22517.1 | JX290549_p32 | hypothetical protein | phrog_5394 | unknown function | unknown function | 1 | 21043 | 21240 |
| AFQ22486.1 | JX290549_p1 | hypothetical protein | phrog_25588 | unknown function | unknown function | 1 | 785 | 943 |
| AFQ22527.1 | JX290549_p42 | hypothetical protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29473 | 32187 |
| AFQ22534.1 | JX290549_p49 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 40481 | 40867 |
| AFQ22515.1 | JX290549_p30 | hypothetical protein | phrog_16324 | unknown function | unknown function | 1 | 18317 | 18499 |
| AFQ22514.1 | JX290549_p29 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 17900 | 18202 |
| AFQ22504.1 | JX290549_p19 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10588 | 11073 |
| AFQ22533.1 | JX290549_p48 | hypothetical protein | phrog_9732 | unknown function | unknown function | 1 | 39932 | 40471 |
| AFQ22537.1 | JX290549_p52 | phage tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 41730 | 43490 |
| AFQ22488.1 | JX290549_p3 | hypothetical protein | phrog_6352 | unknown function | unknown function | 1 | 1542 | 1733 |
| AFQ22529.1 | JX290549_p44 | tail fiber protein | phrog_11393 | tail fiber protein | tail | 1 | 35998 | 37602 |
| AFQ22493.1 | JX290549_p8 | hypothetical protein | phrog_6167 | unknown function | unknown function | 1 | 3281 | 3625 |
| AFQ22487.1 | JX290549_p2 | hypothetical protein | phrog_16905 | unknown function | unknown function | 1 | 1348 | 1545 |
| AFQ22535.1 | JX290549_p50 | holin | phrog_20 | holin | lysis | 1 | 40860 | 41126 |
| AFQ22521.1 | JX290549_p36 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23461 | 24330 |
| AFQ22490.1 | JX290549_p5 | hypothetical protein | phrog_30627 | unknown function | unknown function | 1 | 2501 | 2764 |
| AFQ22502.1 | JX290549_p17 | hypothetical protein | phrog_25669 | unknown function | unknown function | 1 | 10047 | 10346 |
| AFQ22497.1 | JX290549_p12 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6888 | 7733 |
| AFQ22491.1 | JX290549_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2841 | 2951 |
| AFQ22532.1 | JX290549_p47 | hypothetical protein | phrog_17528 | unknown function | unknown function | 1 | 39733 | 39921 |
| AFQ22516.1 | JX290549_p31 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18506 | 20950 |
| AFQ22520.1 | JX290549_p35 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 21950 | 23461 |
| AFQ22523.1 | JX290549_p38 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 24799 | 25782 |
| AFQ22511.1 | JX290549_p26 | hypothetical protein | phrog_21729 | unknown function | unknown function | 1 | 16067 | 16288 |
| AFQ22494.1 | JX290549_p9 | hypothetical protein | phrog_13313 | unknown function | unknown function | 1 | 3643 | 5376 |
| AFQ22489.1 | JX290549_p4 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 1868 | 2437 |
| AFQ22525.1 | JX290549_p40 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 26522 | 28852 |
| AFQ22531.1 | JX290549_p46 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37907 | 39724 |
| AFQ22495.1 | JX290549_p10 | peptidase | phrog_4191 | peptidase | other | 1 | 5366 | 6337 |
| AFQ22506.1 | JX290549_p21 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 13406 | 14242 |
| AFQ22530.1 | JX290549_p45 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 37611 | 37898 |
| AFQ22510.1 | JX290549_p25 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15661 | 16086 |
| AFQ22496.1 | JX290549_p11 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 6324 | 6758 |
| AFQ22528.1 | JX290549_p43 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32197 | 35988 |
| AFQ22498.1 | JX290549_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7821 | 8057 |
| AFQ22522.1 | JX290549_p37 | endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24344 | 24802 |