Genomic map of Pectobacterium phage PhiM1 (JX290549)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX290549
Definition
Pectobacterium phage PhiM1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Corkvirinae; Phimunavirus; Pectobacterium virus fM1.
DB of origin
NUCCORE
Length
43827
Host Name
Pectobacterium atrosepticum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
49.18
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFQ22492.1 JX290549_p7 hypothetical protein phrog_32621 unknown function unknown function 1 3105 3284
AFQ22505.1 JX290549_p20 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11045 13387
AFQ22500.1 JX290549_p15 hypothetical protein singleton unknown function unknown function 1 9586 9795
AFQ22512.1 JX290549_p27 hypothetical protein phrog_221 metallo-phosphoesterase other 1 16450 17424
AFQ22503.1 JX290549_p18 hypothetical protein phrog_15093 unknown function unknown function 1 10339 10521
AFQ22519.1 JX290549_p34 structural protein phrog_3112 virion structural protein head and packaging 1 21645 21947
AFQ22507.1 JX290549_p22 DNA exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14256 15302
AFQ22509.1 JX290549_p24 hypothetical protein phrog_28780 unknown function unknown function 1 15423 15668
AFQ22499.1 JX290549_p14 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8058 9320
AFQ22501.1 JX290549_p16 hypothetical protein phrog_22533 endonuclease DNA, RNA and nucleotide metabolism 1 9827 10054
AFQ22518.1 JX290549_p33 hypothetical protein phrog_5167 unknown function unknown function 1 21215 21628
AFQ22524.1 JX290549_p39 tail tubular protein A phrog_446 tail protein tail 1 25955 26512
AFQ22526.1 JX290549_p41 internal virion protein phrog_4295 internal virion protein head and packaging 1 28849 29463
AFQ22536.1 JX290549_p51 endolysin phrog_7 endolysin lysis 1 41110 41715
AFQ22508.1 JX290549_p23 hypothetical protein phrog_36979 unknown function unknown function 1 15169 15426
AFQ22513.1 JX290549_p28 polynucleotide 5' kinase/3' phosphatase phrog_415 polynucleotide kinase other 1 17535 17903
AFQ22517.1 JX290549_p32 hypothetical protein phrog_5394 unknown function unknown function 1 21043 21240
AFQ22486.1 JX290549_p1 hypothetical protein phrog_25588 unknown function unknown function 1 785 943
AFQ22527.1 JX290549_p42 hypothetical protein phrog_2083 internal virion lysozyme motif head and packaging 1 29473 32187
AFQ22534.1 JX290549_p49 hypothetical protein phrog_1804 Rz-like spanin lysis 1 40481 40867
AFQ22515.1 JX290549_p30 hypothetical protein phrog_16324 unknown function unknown function 1 18317 18499
AFQ22514.1 JX290549_p29 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 17900 18202
AFQ22504.1 JX290549_p19 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 10588 11073
AFQ22533.1 JX290549_p48 hypothetical protein phrog_9732 unknown function unknown function 1 39932 40471
AFQ22537.1 JX290549_p52 phage tailspike protein phrog_1819 tail spike protein tail 1 41730 43490
AFQ22488.1 JX290549_p3 hypothetical protein phrog_6352 unknown function unknown function 1 1542 1733
AFQ22529.1 JX290549_p44 tail fiber protein phrog_11393 tail fiber protein tail 1 35998 37602
AFQ22493.1 JX290549_p8 hypothetical protein phrog_6167 unknown function unknown function 1 3281 3625
AFQ22487.1 JX290549_p2 hypothetical protein phrog_16905 unknown function unknown function 1 1348 1545
AFQ22535.1 JX290549_p50 holin phrog_20 holin lysis 1 40860 41126
AFQ22521.1 JX290549_p36 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 23461 24330
AFQ22490.1 JX290549_p5 hypothetical protein phrog_30627 unknown function unknown function 1 2501 2764
AFQ22502.1 JX290549_p17 hypothetical protein phrog_25669 unknown function unknown function 1 10047 10346
AFQ22497.1 JX290549_p12 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 6888 7733
AFQ22491.1 JX290549_p6 hypothetical protein singleton unknown function unknown function 1 2841 2951
AFQ22532.1 JX290549_p47 hypothetical protein phrog_17528 unknown function unknown function 1 39733 39921
AFQ22516.1 JX290549_p31 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 18506 20950
AFQ22520.1 JX290549_p35 head-tail connector protein phrog_449 head-tail adaptor connector 1 21950 23461
AFQ22523.1 JX290549_p38 capsid protein phrog_267 major head protein head and packaging 1 24799 25782
AFQ22511.1 JX290549_p26 hypothetical protein phrog_21729 unknown function unknown function 1 16067 16288
AFQ22494.1 JX290549_p9 hypothetical protein phrog_13313 unknown function unknown function 1 3643 5376
AFQ22489.1 JX290549_p4 hypothetical protein phrog_5277 unknown function unknown function 1 1868 2437
AFQ22525.1 JX290549_p40 tail tubular protein B phrog_457 tail protein tail 1 26522 28852
AFQ22531.1 JX290549_p46 DNA maturase B phrog_38 terminase large subunit head and packaging 1 37907 39724
AFQ22495.1 JX290549_p10 peptidase phrog_4191 peptidase other 1 5366 6337
AFQ22506.1 JX290549_p21 hypothetical protein phrog_862 unknown function unknown function 1 13406 14242
AFQ22530.1 JX290549_p45 DNA maturase A phrog_891 terminase small subunit head and packaging 1 37611 37898
AFQ22510.1 JX290549_p25 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 15661 16086
AFQ22496.1 JX290549_p11 hypothetical protein phrog_4317 unknown function unknown function 1 6324 6758
AFQ22528.1 JX290549_p43 internal core protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32197 35988
AFQ22498.1 JX290549_p13 hypothetical protein singleton unknown function unknown function 1 7821 8057
AFQ22522.1 JX290549_p37 endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24344 24802