| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX297445 |
Definition |
Salmonella phage vB_SenS_AG11, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus AG11. |
DB of origin |
PVOG |
Length |
41546 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
49.9 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFO12459.1 | JX297445_p59 | lysozyme | phrog_7 | endolysin | lysis | 1 | 39433 | 39915 |
| AFO12421.1 | JX297445_p21 | hypothetical protein | phrog_2452 | unknown function | unknown function | -1 | 12719 | 12949 |
| AFO12443.1 | JX297445_p43 | DNA-binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 32302 | 32520 |
| AFO12411.1 | JX297445_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7285 | 8334 |
| AFO12453.1 | JX297445_p53 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 37260 | 37463 |
| AFO12426.1 | JX297445_p26 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 15417 | 17726 |
| AFO12416.1 | JX297445_p16 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 9782 | 10351 |
| AFO12439.1 | JX297445_p39 | hypothetical protein | phrog_13603 | unknown function | unknown function | -1 | 29843 | 30019 |
| AFO12420.1 | JX297445_p20 | tail protein | phrog_290 | minor tail protein | tail | 1 | 11521 | 12690 |
| AFO12402.1 | JX297445_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 536 | 1807 |
| AFO12429.1 | JX297445_p29 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 18737 | 19102 |
| AFO12427.1 | JX297445_p27 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 17728 | 18228 |
| AFO12428.1 | JX297445_p28 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 18225 | 18740 |
| AFO12458.1 | JX297445_p58 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38901 | 39446 |
| AFO12446.1 | JX297445_p46 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 35064 | 35297 |
| AFO12460.1 | JX297445_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39926 | 40045 |
| AFO12424.1 | JX297445_p24 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 14646 | 15062 |
| AFO12405.1 | JX297445_p5 | head protein | phrog_241 | head morphogenesis | head and packaging | 1 | 4178 | 5221 |
| AFO12437.1 | JX297445_p37 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 25979 | 29077 |
| AFO12403.1 | JX297445_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 1820 | 3289 |
| AFO12415.1 | JX297445_p15 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 9270 | 9779 |
| AFO12464.1 | JX297445_p64 | NinH protein | phrog_268 | unknown function | unknown function | 1 | 40682 | 40906 |
| AFO12434.1 | JX297445_p34 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 25382 | 25573 |
| AFO12441.1 | JX297445_p41 | hypothetical protein | phrog_1997 | unknown function | unknown function | -1 | 31440 | 31604 |
| AFO12452.1 | JX297445_p52 | hypothetical protein | phrog_9384 | unknown function | unknown function | 1 | 37035 | 37199 |
| AFO12410.1 | JX297445_p10 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6574 | 7281 |
| AFO12445.1 | JX297445_p45 | helicase-primase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 32821 | 35007 |
| AFO12430.1 | JX297445_p30 | tail protein | phrog_469 | tail protein | tail | 1 | 19093 | 21651 |
| AFO12454.1 | JX297445_p54 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 37460 | 37831 |
| AFO12422.1 | JX297445_p22 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 12946 | 14076 |
| AFO12409.1 | JX297445_p9 | hypothetical protein | phrog_1267 | Rz-like spanin | lysis | 1 | 6232 | 6495 |
| AFO12455.1 | JX297445_p55 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 37837 | 38271 |
| AFO12408.1 | JX297445_p8 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 6000 | 6386 |
| AFO12438.1 | JX297445_p38 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 29135 | 29761 |
| AFO12451.1 | JX297445_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36897 | 37013 |
| AFO12463.1 | JX297445_p63 | hypothetical protein | phrog_1402 | unknown function | unknown function | 1 | 40506 | 40685 |
| AFO12444.1 | JX297445_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32533 | 32685 |
| AFO12448.1 | JX297445_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36085 | 36264 |
| AFO12433.1 | JX297445_p33 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 23961 | 25385 |
| AFO12462.1 | JX297445_p62 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 40319 | 40483 |
| AFO12417.1 | JX297445_p17 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 10351 | 10710 |
| AFO12404.1 | JX297445_p4 | hypothetical protein | phrog_6095 | amidase | lysis | -1 | 3320 | 3973 |
| AFO12401.1 | JX297445_p1 | terminase small subunit | phrog_3064 | terminase | head and packaging | 1 | 1 | 546 |
| AFO12431.1 | JX297445_p31 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 21664 | 23718 |
| AFO12442.1 | JX297445_p42 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 31647 | 32168 |
| AFO12457.1 | JX297445_p57 | holin-like class I | phrog_2508 | holin | lysis | 1 | 38633 | 38923 |
| AFO12466.1 | JX297445_p66 | hypothetical protein | phrog_10134 | unknown function | unknown function | 1 | 41222 | 41452 |
| AFO12449.1 | JX297445_p49 | hypothetical protein | phrog_625 | unknown function | unknown function | 1 | 36280 | 36555 |
| AFO12413.1 | JX297445_p13 | tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 8691 | 9041 |
| AFO12436.1 | JX297445_p36 | hypothetical protein | phrog_38225 | unknown function | unknown function | -1 | 25879 | 25989 |
| AFO12432.1 | JX297445_p32 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 23803 | 23964 |
| AFO12450.1 | JX297445_p50 | EaA protein | phrog_924 | unknown function | unknown function | 1 | 36552 | 36746 |
| AFO12447.1 | JX297445_p47 | DNA-binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 35294 | 35464 |
| AFO12425.1 | JX297445_p25 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 15068 | 15424 |
| AFO12412.1 | JX297445_p12 | hypothetical protein | phrog_4366 | head fiber protein | head and packaging | 1 | 8395 | 8679 |
| AFO12435.1 | JX297445_p35 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 25605 | 25892 |
| AFO12423.1 | JX297445_p23 | hypothetical protein | phrog_14165 | unknown function | unknown function | -1 | 14139 | 14468 |
| AFO12440.1 | JX297445_p40 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 30019 | 31443 |
| AFO12414.1 | JX297445_p14 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 9078 | 9266 |
| AFO12456.1 | JX297445_p56 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 38350 | 38631 |
| AFO12465.1 | JX297445_p65 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 40906 | 41205 |
| AFO12407.1 | JX297445_p7 | hypothetical protein | phrog_14923 | unknown function | unknown function | 1 | 5764 | 5955 |
| AFO12406.1 | JX297445_p6 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 5224 | 5682 |
| AFO12418.1 | JX297445_p18 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 10707 | 11102 |
| AFO12419.1 | JX297445_p19 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 11102 | 11521 |
| AFO12461.1 | JX297445_p61 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 40100 | 40318 |