| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX307705 |
Definition |
Mycobacterium phage Marcell, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
PVOG |
Length |
49186 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
83 |
%GC |
63.97 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFU20774.1 | JX307705_p68 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43476 | 43988 |
| AFU20762.1 | JX307705_p56 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38963 | 39439 |
| AFU20780.1 | JX307705_p75 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 45486 | 45638 |
| AFU20755.1 | JX307705_p47 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35396 | 36187 |
| AFU20754.1 | JX307705_p46 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35217 | 35399 |
| AFU20741.1 | JX307705_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23952 | 24299 |
| AFU20723.1 | JX307705_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5946 | 6914 |
| AFU20733.1 | JX307705_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14347 | 14793 |
| AFU20736.1 | JX307705_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19089 | 21146 |
| AFU20779.1 | JX307705_p74 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45322 | 45489 |
| AFU20766.1 | JX307705_p60 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40134 | 40943 |
| AFU20743.1 | JX307705_p32 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26170 | 27648 |
| AFU20777.1 | JX307705_p72 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 45012 | 45137 |
| AFU20747.1 | JX307705_p39 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31682 | 31852 |
| AFU20742.1 | JX307705_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24324 | 26177 |
| AFU20726.1 | JX307705_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10058 | 10939 |
| AFU20794.1 | JX307705_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29790 | 31292 |
| AFU20758.1 | JX307705_p51 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37265 | 37819 |
| AFU20719.1 | JX307705_p5 | structural protein | phrog_1197 | tail protein | tail | 1 | 2194 | 3264 |
| AFU20763.1 | JX307705_p57 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 39426 | 39512 |
| AFU20718.1 | JX307705_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1622 | 1933 |
| AFU20798.1 | JX307705_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15675 | 16573 |
| AFU20783.1 | JX307705_p78 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 46830 | 47114 |
| AFU20757.1 | JX307705_p50 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37089 | 37268 |
| AFU20730.1 | JX307705_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13137 | 13586 |
| AFU20796.1 | JX307705_p70 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 44546 | 44815 |
| AFU20732.1 | JX307705_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13948 | 14343 |
| AFU20734.1 | JX307705_p21 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14802 | 15653 |
| AFU20737.1 | JX307705_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21143 | 21325 |
| AFU20748.1 | JX307705_p40 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31849 | 31944 |
| AFU20735.1 | JX307705_p24 | tapemeasure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16585 | 19065 |
| AFU20751.1 | JX307705_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32605 | 34431 |
| AFU20724.1 | JX307705_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6934 | 8622 |
| AFU20727.1 | JX307705_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10998 | 11510 |
| AFU20769.1 | JX307705_p63 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 41363 | 41686 |
| AFU20752.1 | JX307705_p44 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34468 | 34698 |
| AFU20716.1 | JX307705_p2 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 743 | 1039 |
| AFU20717.1 | JX307705_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1074 | 1508 |
| AFU20781.1 | JX307705_p76 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 45635 | 45787 |
| AFU20775.1 | JX307705_p69 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 44250 | 44549 |
| AFU20740.1 | JX307705_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23608 | 23955 |
| AFU20792.1 | JX307705_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27741 | 28061 |
| AFU20722.1 | JX307705_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4523 | 5956 |
| AFU20786.1 | JX307705_p81 | hypothetical protein | phrog_5542 | unknown function | unknown function | -1 | 48034 | 48393 |
| AFU20731.1 | JX307705_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13586 | 13948 |
| AFU20739.1 | JX307705_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23165 | 23611 |
| AFU20770.1 | JX307705_p64 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 41690 | 41872 |
| AFU20765.1 | JX307705_p59 | hypothetical protein | phrog_1941 | unknown function | unknown function | -1 | 39784 | 40110 |
| AFU20797.1 | JX307705_p53 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38183 | 38698 |
| AFU20729.1 | JX307705_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12619 | 13137 |
| AFU20787.1 | JX307705_p82 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 48390 | 48491 |
| AFU20768.1 | JX307705_p62 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41073 | 41366 |
| AFU20761.1 | JX307705_p55 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38832 | 38966 |
| AFU20728.1 | JX307705_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11521 | 12540 |
| AFU20750.1 | JX307705_p42 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32225 | 32584 |
| AFU20784.1 | JX307705_p79 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 47413 | 47568 |
| AFU20772.1 | JX307705_p66 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 42716 | 43042 |
| AFU20753.1 | JX307705_p45 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34729 | 35220 |
| AFU20725.1 | JX307705_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8619 | 10061 |
| AFU20738.1 | JX307705_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21325 | 23127 |
| AFU20744.1 | JX307705_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28071 | 28262 |
| AFU20788.1 | JX307705_p83 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48586 | 48789 |
| AFU20764.1 | JX307705_p58 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39509 | 39784 |
| AFU20782.1 | JX307705_p77 | DNA methylase | phrog_363 | DNA methyltransferase | other | -1 | 46087 | 46764 |
| AFU20771.1 | JX307705_p65 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41899 | 42723 |
| AFU20773.1 | JX307705_p67 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 43039 | 43434 |
| AFU20791.1 | JX307705_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15675 | 16151 |
| AFU20720.1 | JX307705_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3998 | 4258 |
| AFU20759.1 | JX307705_p52 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37816 | 38337 |
| AFU20756.1 | JX307705_p48 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36180 | 36320 |
| AFU20745.1 | JX307705_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29341 | 29637 |
| AFU20767.1 | JX307705_p61 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 40930 | 41076 |
| AFU20789.1 | JX307705_p1 | hypothetical protein | phrog_31705 | unknown function | unknown function | 1 | 615 | 743 |
| AFU20749.1 | JX307705_p41 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31941 | 32228 |
| AFU20760.1 | JX307705_p54 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38677 | 38835 |
| AFU20790.1 | JX307705_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3274 | 3984 |
| AFU20776.1 | JX307705_p71 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 44812 | 45015 |
| AFU20778.1 | JX307705_p73 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 45134 | 45322 |
| AFU20785.1 | JX307705_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47846 | 48034 |
| AFU20793.1 | JX307705_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28259 | 29206 |
| AFU20795.1 | JX307705_p49 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36325 | 37092 |
| AFU20746.1 | JX307705_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31413 | 31685 |
| AFU20721.1 | JX307705_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4266 | 4523 |