Genomic map of Pseudomonas phage YMC/01/01/P52_PAE_BP (JX403939)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX403939
Definition
Pseudomonas phage YMC/01/01/P52_PAE_BP, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
49381
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
62.16
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFQ22095.1 JX403939_p70 lytic enzyme phrog_181 endolysin lysis -1 45498 46127
AFQ22089.1 JX403939_p64 hypothetical protein phrog_5086 unknown function unknown function 1 42111 42458
AFQ22083.1 JX403939_p58 hypothetical protein phrog_28019 unknown function unknown function 1 40028 40195
AFQ22081.1 JX403939_p56 DNA cytosine methyltransferase phrog_116 DNA methyltransferase other 1 37597 39591
AFQ22084.1 JX403939_p59 hypothetical protein singleton unknown function unknown function -1 40208 40408
AFQ22055.1 JX403939_p30 hypothetical protein phrog_163 CII-like transcriptional activator transcription regulation -1 21314 21886
AFQ22060.1 JX403939_p35 hypothetical protein phrog_17996 unknown function unknown function 1 24059 24343
AFQ22078.1 JX403939_p53 DNA segregation ATPase FtsK/SpoIIIE phrog_6576 unknown function unknown function 1 32145 33077
AFQ22038.1 JX403939_p13 hypothetical protein phrog_771 virion structural protein head and packaging -1 9457 10551
AFQ22097.1 JX403939_p72 hypothetical protein phrog_23466 unknown function unknown function -1 48342 49346
AFQ22030.1 JX403939_p5 hypothetical protein phrog_791 unknown function unknown function -1 5514 6131
AFQ22063.1 JX403939_p38 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism 1 25829 26386
AFQ22053.1 JX403939_p28 hypothetical protein singleton unknown function unknown function -1 20861 20977
AFQ22076.1 JX403939_p51 hypothetical protein phrog_561 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31001 31927
AFQ22062.1 JX403939_p37 hypothetical protein phrog_2707 unknown function unknown function -1 24764 25108
AFQ22034.1 JX403939_p9 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7971 8456
AFQ22088.1 JX403939_p63 hypothetical protein phrog_4029 unknown function unknown function 1 41566 42114
AFQ22059.1 JX403939_p34 hypothetical protein phrog_3135 unknown function unknown function 1 23770 24081
AFQ22045.1 JX403939_p20 PBSX family phage terminase large subunit phrog_2 terminase large subunit head and packaging -1 14757 16010
AFQ22040.1 JX403939_p15 hypothetical protein phrog_760 unknown function unknown function -1 11020 12291
AFQ22054.1 JX403939_p29 hypothetical protein phrog_6111 unknown function unknown function -1 21030 21311
AFQ22056.1 JX403939_p31 hypothetical protein phrog_3983 unknown function unknown function 1 21969 22481
AFQ22033.1 JX403939_p8 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 7509 7913
AFQ22082.1 JX403939_p57 hypothetical protein phrog_3190 unknown function unknown function 1 39546 40031
AFQ22026.1 JX403939_p1 hypothetical protein phrog_329 minor tail protein tail -1 1662 2069
AFQ22046.1 JX403939_p21 terminase small subunit phrog_51 terminase small subunit head and packaging -1 15994 16536
AFQ22071.1 JX403939_p46 hypothetical protein phrog_6457 unknown function unknown function 1 29190 29381
AFQ22072.1 JX403939_p47 hypothetical protein phrog_5864 unknown function unknown function 1 29365 29502
AFQ22028.1 JX403939_p3 hypothetical protein phrog_384 virion structural protein head and packaging -1 2549 2890
AFQ22039.1 JX403939_p14 hypothetical protein phrog_766 head decoration head and packaging -1 10567 11016
AFQ22058.1 JX403939_p33 hypothetical protein phrog_4 transcriptional repressor transcription regulation 1 23101 23721
AFQ22086.1 JX403939_p61 hypothetical protein phrog_5614 unknown function unknown function 1 40650 41090
AFQ22052.1 JX403939_p27 hypothetical protein phrog_10469 DnaD-like helicase loader DNA, RNA and nucleotide metabolism -1 20068 20868
AFQ22067.1 JX403939_p42 hypothetical protein phrog_5527 transcriptional regulator transcription regulation 1 27458 27829
AFQ22074.1 JX403939_p49 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 29977 30780
AFQ22093.1 JX403939_p68 hypothetical protein phrog_3580 unknown function unknown function -1 44837 45136
AFQ22036.1 JX403939_p11 hypothetical protein phrog_786 unknown function unknown function -1 8770 9171
AFQ22064.1 JX403939_p39 hypothetical protein phrog_24301 unknown function unknown function 1 26403 26540
AFQ22065.1 JX403939_p40 hypothetical protein phrog_9037 unknown function unknown function 1 26557 26820
AFQ22079.1 JX403939_p54 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 33081 34823
AFQ22068.1 JX403939_p43 hypothetical protein phrog_1934 unknown function unknown function 1 28306 28836
AFQ22037.1 JX403939_p12 hypothetical protein phrog_2138 unknown function unknown function -1 9256 9447
AFQ22085.1 JX403939_p60 hypothetical protein phrog_5315 unknown function unknown function 1 40474 40620
AFQ22080.1 JX403939_p55 DNA methylase N-4/N-6 domain-containing protein phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 34970 37600
AFQ22073.1 JX403939_p48 hypothetical protein phrog_25114 unknown function unknown function 1 29510 29980
AFQ22092.1 JX403939_p67 hypothetical protein phrog_3944 unknown function unknown function -1 44538 44801
AFQ22031.1 JX403939_p6 hypothetical protein phrog_853 major tail protein tail -1 6128 7123
AFQ22069.1 JX403939_p44 hypothetical protein phrog_6125 unknown function unknown function 1 28827 28988
AFQ22070.1 JX403939_p45 hypothetical protein phrog_6033 unknown function unknown function 1 29002 29193
AFQ22049.1 JX403939_p24 hypothetical protein phrog_3373 unknown function unknown function -1 17326 18195
AFQ22094.1 JX403939_p69 hypothetical protein phrog_3774 unknown function unknown function -1 45133 45501
AFQ22090.1 JX403939_p65 hypothetical protein phrog_4389 unknown function unknown function 1 42455 42877
AFQ22066.1 JX403939_p41 hypothetical protein phrog_14855 unknown function unknown function 1 26862 27401
AFQ22048.1 JX403939_p23 hypothetical protein phrog_198 holin lysis -1 16822 17211
AFQ22075.1 JX403939_p50 hypothetical protein phrog_16104 unknown function unknown function 1 30777 31004
AFQ22091.1 JX403939_p66 hypothetical protein phrog_1 integrase integration and excision 1 43156 44373
AFQ22029.1 JX403939_p4 hypothetical protein phrog_1107 tail length tape measure protein tail -1 3013 5514
AFQ22032.1 JX403939_p7 hypothetical protein phrog_782 unknown function unknown function -1 7138 7512
AFQ22057.1 JX403939_p32 hypothetical protein phrog_35 transcriptional repressor transcription regulation -1 22740 22943
AFQ22027.1 JX403939_p2 hypothetical protein phrog_396 minor tail protein tail -1 2074 2565
AFQ22043.1 JX403939_p18 hypothetical protein phrog_10752 unknown function unknown function -1 14560 14757
AFQ22041.1 JX403939_p16 phage Mu protein F-like protein phrog_758 head morphogenesis head and packaging -1 12301 13152
AFQ22096.1 JX403939_p71 hypothetical protein phrog_32929 unknown function unknown function -1 46224 48281
AFQ22035.1 JX403939_p10 hypothetical protein phrog_797 unknown function unknown function -1 8453 8773
AFQ22077.1 JX403939_p52 hypothetical protein phrog_7521 unknown function unknown function 1 31934 32134
AFQ22050.1 JX403939_p25 holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 18224 18667
AFQ22042.1 JX403939_p17 hypothetical protein phrog_146 portal protein head and packaging -1 13187 14557
AFQ22061.1 JX403939_p36 hypothetical protein phrog_6136 unknown function unknown function 1 24435 24671
AFQ22051.1 JX403939_p26 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 18660 20075
AFQ22044.1 JX403939_p19 hypothetical protein singleton unknown function unknown function 1 14678 14803
AFQ22087.1 JX403939_p62 hypothetical protein singleton unknown function unknown function 1 41234 41365
AFQ22047.1 JX403939_p22 hypothetical protein phrog_217 holin lysis -1 16545 16829