| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX409894 |
Definition |
Streptococcus phage LYGO9, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
41660 |
Host Name |
Streptococcus agalactiae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
36.72 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFQ95907.1 | JX409894_p37 | hypothetical protein | phrog_30491 | unknown function | unknown function | -1 | 27511 | 27657 |
| AFQ95963.1 | JX409894_p36 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 26252 | 27457 |
| AFQ95937.1 | JX409894_p26 | hypothetical protein | phrog_6190 | unknown function | unknown function | -1 | 21564 | 21731 |
| AFQ95931.1 | JX409894_p8 | Cro/CI transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 3187 | 3528 |
| AFQ95956.1 | JX409894_p22 | minor structural protein | phrog_372 | tail protein | tail | -1 | 10289 | 12280 |
| AFQ95970.1 | JX409894_p59 | RecT protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 37885 | 38847 |
| AFQ95924.1 | JX409894_p20 | hypothetical protein | phrog_1567 | unknown function | unknown function | -1 | 9762 | 9974 |
| AFQ95913.1 | JX409894_p42 | hypothetical protein | phrog_38755 | unknown function | unknown function | -1 | 31580 | 31792 |
| AFQ95954.1 | JX409894_p18 | holin | phrog_297 | holin | lysis | -1 | 9200 | 9454 |
| AFQ95935.1 | JX409894_p15 | ATPase | phrog_3364 | unknown function | unknown function | -1 | 6711 | 7607 |
| AFQ95960.1 | JX409894_p32 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 23919 | 24221 |
| AFQ95938.1 | JX409894_p27 | hypothetical protein | phrog_187 | head-tail adaptor | connector | -1 | 21761 | 22081 |
| AFQ95927.1 | JX409894_p1 | hypothetical protein | phrog_5866 | unknown function | unknown function | -1 | 201 | 491 |
| AFQ95912.1 | JX409894_p38 | hypothetical protein | phrog_15305 | unknown function | unknown function | -1 | 27668 | 27928 |
| AFQ95923.1 | JX409894_p4 | hypothetical protein | phrog_4679 | unknown function | unknown function | -1 | 1181 | 1324 |
| AFQ95949.1 | JX409894_p60 | hypothetical protein | phrog_2486 | unknown function | unknown function | -1 | 38850 | 39179 |
| AFQ95942.1 | JX409894_p41 | HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 30499 | 30834 |
| AFQ95928.1 | JX409894_p2 | DNA-binding phage protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 569 | 754 |
| AFQ95919.1 | JX409894_p29 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 22779 | 23204 |
| AFQ95953.1 | JX409894_p16 | lysin | phrog_291 | endolysin | lysis | -1 | 7743 | 9074 |
| AFQ95952.1 | JX409894_p11 | integrase | phrog_1 | integrase | integration and excision | 1 | 4515 | 5603 |
| AFQ95948.1 | JX409894_p57 | hypothetical protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 36731 | 36928 |
| AFQ95971.1 | JX409894_p65 | phage DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | -1 | 39997 | 40767 |
| AFQ95951.1 | JX409894_p62 | hypothetical protein | phrog_2410 | unknown function | unknown function | -1 | 39345 | 39599 |
| AFQ95911.1 | JX409894_p33 | hypothetical protein | phrog_12526 | unknown function | unknown function | -1 | 24224 | 24385 |
| AFQ95958.1 | JX409894_p24 | minor structural protein | phrog_202 | distal tail protein Dit | tail | -1 | 16102 | 17613 |
| AFQ95915.1 | JX409894_p51 | hypothetical protein | phrog_13248 | unknown function | unknown function | -1 | 34866 | 35081 |
| AFQ95943.1 | JX409894_p47 | hypothetical protein | phrog_2275 | unknown function | unknown function | -1 | 33602 | 33919 |
| AFQ95959.1 | JX409894_p28 | major tail protein | phrog_88 | major tail protein | tail | -1 | 22188 | 22763 |
| AFQ95932.1 | JX409894_p9 | CI-like repressor | phrog_87 | metallo-protease | other | 1 | 3515 | 3895 |
| AFQ95972.1 | JX409894_p66 | primosome component-like protein | phrog_1163 | unknown function | unknown function | -1 | 40776 | 41624 |
| AFQ95957.1 | JX409894_p23 | minor structural protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 12293 | 16063 |
| AFQ95930.1 | JX409894_p6 | hypothetical protein | phrog_1733 | unknown function | unknown function | -1 | 1838 | 2749 |
| AFQ95933.1 | JX409894_p12 | hypothetical protein | phrog_2133 | unknown function | unknown function | -1 | 5808 | 5996 |
| AFQ95940.1 | JX409894_p30 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 23201 | 23578 |
| AFQ95909.1 | JX409894_p10 | hypothetical protein | phrog_9170 | unknown function | unknown function | 1 | 3947 | 4399 |
| AFQ95946.1 | JX409894_p55 | hypothetical protein | phrog_1921 | unknown function | unknown function | -1 | 35929 | 36276 |
| AFQ95925.1 | JX409894_p45 | hypothetical protein | phrog_37319 | unknown function | unknown function | -1 | 33202 | 33369 |
| AFQ95945.1 | JX409894_p54 | hypothetical protein | phrog_1485 | unknown function | unknown function | -1 | 35621 | 35917 |
| AFQ95908.1 | JX409894_p44 | hypothetical protein | phrog_32555 | unknown function | unknown function | -1 | 33062 | 33202 |
| AFQ95916.1 | JX409894_p5 | hypothetical protein | phrog_2902 | anti-repressor | transcription regulation | -1 | 1336 | 1845 |
| AFQ95947.1 | JX409894_p56 | hypothetical protein | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 36266 | 36619 |
| AFQ95955.1 | JX409894_p21 | hypothetical protein | phrog_1060 | unknown function | unknown function | -1 | 9949 | 10275 |
| AFQ95921.1 | JX409894_p63 | hypothetical protein | phrog_4755 | unknown function | unknown function | -1 | 39586 | 39861 |
| AFQ95950.1 | JX409894_p61 | hypothetical protein | phrog_2553 | unknown function | unknown function | -1 | 39181 | 39342 |
| AFQ95922.1 | JX409894_p64 | hypothetical protein | phrog_3756 | unknown function | unknown function | -1 | 39851 | 40000 |
| AFQ95918.1 | JX409894_p14 | hypothetical protein | phrog_9989 | unknown function | unknown function | -1 | 6418 | 6717 |
| AFQ95910.1 | JX409894_p17 | hypothetical protein | phrog_16966 | unknown function | unknown function | -1 | 9075 | 9191 |
| AFQ95969.1 | JX409894_p58 | hypothetical protein | phrog_1227 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 37091 | 37888 |
| AFQ95936.1 | JX409894_p19 | hypothetical protein | phrog_1009 | unknown function | unknown function | -1 | 9456 | 9743 |
| AFQ95926.1 | JX409894_p49 | hypothetical protein | phrog_20587 | unknown function | unknown function | -1 | 34517 | 34642 |
| AFQ95920.1 | JX409894_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35479 | 35595 |
| AFQ95967.1 | JX409894_p48 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 33906 | 34436 |
| AFQ95962.1 | JX409894_p35 | pahge ClpP protease | phrog_94 | head maturation protease | head and packaging | -1 | 25612 | 26283 |
| AFQ95944.1 | JX409894_p50 | hypothetical protein | phrog_1027 | unknown function | unknown function | -1 | 34639 | 34869 |
| AFQ95914.1 | JX409894_p46 | hypothetical protein | phrog_2397 | unknown function | unknown function | -1 | 33366 | 33584 |
| AFQ95964.1 | JX409894_p39 | phage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 28089 | 29843 |
| AFQ95939.1 | JX409894_p25 | tail tape measure protein | phrog_1293 | tail length tape measure protein | tail | -1 | 17610 | 21551 |
| AFQ95934.1 | JX409894_p13 | CsbD-like family | phrog_4133 | unknown function | unknown function | -1 | 6108 | 6308 |
| AFQ95929.1 | JX409894_p3 | hypothetical protein | phrog_37088 | unknown function | unknown function | 1 | 899 | 1111 |
| AFQ95966.1 | JX409894_p43 | phage encoded transcriptional regulator ArpU family | phrog_248 | transcriptional activator | transcription regulation | -1 | 32242 | 32676 |
| AFQ95961.1 | JX409894_p34 | phage major head capsid protein | phrog_10 | major head protein | head and packaging | -1 | 24399 | 25574 |
| AFQ95968.1 | JX409894_p52 | hypothetical protein | phrog_98 | unknown function | unknown function | -1 | 35078 | 35482 |
| AFQ95917.1 | JX409894_p7 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 2778 | 2990 |
| AFQ95941.1 | JX409894_p31 | hypothetical protein | phrog_25 | head closure Hc1 | connector | -1 | 23575 | 23907 |
| AFQ95965.1 | JX409894_p40 | phage terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 29858 | 30325 |