Genomic map of Streptococcus phage LYGO9 (JX409894)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX409894
Definition
Streptococcus phage LYGO9, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
41660
Host Name
Streptococcus agalactiae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
36.72
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFQ95907.1 JX409894_p37 hypothetical protein phrog_30491 unknown function unknown function -1 27511 27657
AFQ95963.1 JX409894_p36 portal protein phrog_12 portal protein head and packaging -1 26252 27457
AFQ95937.1 JX409894_p26 hypothetical protein phrog_6190 unknown function unknown function -1 21564 21731
AFQ95931.1 JX409894_p8 Cro/CI transcriptional regulator phrog_8 transcriptional regulator transcription regulation 1 3187 3528
AFQ95956.1 JX409894_p22 minor structural protein phrog_372 tail protein tail -1 10289 12280
AFQ95970.1 JX409894_p59 RecT protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 37885 38847
AFQ95924.1 JX409894_p20 hypothetical protein phrog_1567 unknown function unknown function -1 9762 9974
AFQ95913.1 JX409894_p42 hypothetical protein phrog_38755 unknown function unknown function -1 31580 31792
AFQ95954.1 JX409894_p18 holin phrog_297 holin lysis -1 9200 9454
AFQ95935.1 JX409894_p15 ATPase phrog_3364 unknown function unknown function -1 6711 7607
AFQ95960.1 JX409894_p32 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 23919 24221
AFQ95938.1 JX409894_p27 hypothetical protein phrog_187 head-tail adaptor connector -1 21761 22081
AFQ95927.1 JX409894_p1 hypothetical protein phrog_5866 unknown function unknown function -1 201 491
AFQ95912.1 JX409894_p38 hypothetical protein phrog_15305 unknown function unknown function -1 27668 27928
AFQ95923.1 JX409894_p4 hypothetical protein phrog_4679 unknown function unknown function -1 1181 1324
AFQ95949.1 JX409894_p60 hypothetical protein phrog_2486 unknown function unknown function -1 38850 39179
AFQ95942.1 JX409894_p41 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30499 30834
AFQ95928.1 JX409894_p2 DNA-binding phage protein phrog_3 transcriptional repressor transcription regulation -1 569 754
AFQ95919.1 JX409894_p29 hypothetical protein phrog_78 tail terminator connector -1 22779 23204
AFQ95953.1 JX409894_p16 lysin phrog_291 endolysin lysis -1 7743 9074
AFQ95952.1 JX409894_p11 integrase phrog_1 integrase integration and excision 1 4515 5603
AFQ95948.1 JX409894_p57 hypothetical protein phrog_803 host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 36731 36928
AFQ95971.1 JX409894_p65 phage DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism -1 39997 40767
AFQ95951.1 JX409894_p62 hypothetical protein phrog_2410 unknown function unknown function -1 39345 39599
AFQ95911.1 JX409894_p33 hypothetical protein phrog_12526 unknown function unknown function -1 24224 24385
AFQ95958.1 JX409894_p24 minor structural protein phrog_202 distal tail protein Dit tail -1 16102 17613
AFQ95915.1 JX409894_p51 hypothetical protein phrog_13248 unknown function unknown function -1 34866 35081
AFQ95943.1 JX409894_p47 hypothetical protein phrog_2275 unknown function unknown function -1 33602 33919
AFQ95959.1 JX409894_p28 major tail protein phrog_88 major tail protein tail -1 22188 22763
AFQ95932.1 JX409894_p9 CI-like repressor phrog_87 metallo-protease other 1 3515 3895
AFQ95972.1 JX409894_p66 primosome component-like protein phrog_1163 unknown function unknown function -1 40776 41624
AFQ95957.1 JX409894_p23 minor structural protein phrog_588 tail fiber protein and host specificity tail -1 12293 16063
AFQ95930.1 JX409894_p6 hypothetical protein phrog_1733 unknown function unknown function -1 1838 2749
AFQ95933.1 JX409894_p12 hypothetical protein phrog_2133 unknown function unknown function -1 5808 5996
AFQ95940.1 JX409894_p30 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 23201 23578
AFQ95909.1 JX409894_p10 hypothetical protein phrog_9170 unknown function unknown function 1 3947 4399
AFQ95946.1 JX409894_p55 hypothetical protein phrog_1921 unknown function unknown function -1 35929 36276
AFQ95925.1 JX409894_p45 hypothetical protein phrog_37319 unknown function unknown function -1 33202 33369
AFQ95945.1 JX409894_p54 hypothetical protein phrog_1485 unknown function unknown function -1 35621 35917
AFQ95908.1 JX409894_p44 hypothetical protein phrog_32555 unknown function unknown function -1 33062 33202
AFQ95916.1 JX409894_p5 hypothetical protein phrog_2902 anti-repressor transcription regulation -1 1336 1845
AFQ95947.1 JX409894_p56 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 36266 36619
AFQ95955.1 JX409894_p21 hypothetical protein phrog_1060 unknown function unknown function -1 9949 10275
AFQ95921.1 JX409894_p63 hypothetical protein phrog_4755 unknown function unknown function -1 39586 39861
AFQ95950.1 JX409894_p61 hypothetical protein phrog_2553 unknown function unknown function -1 39181 39342
AFQ95922.1 JX409894_p64 hypothetical protein phrog_3756 unknown function unknown function -1 39851 40000
AFQ95918.1 JX409894_p14 hypothetical protein phrog_9989 unknown function unknown function -1 6418 6717
AFQ95910.1 JX409894_p17 hypothetical protein phrog_16966 unknown function unknown function -1 9075 9191
AFQ95969.1 JX409894_p58 hypothetical protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism -1 37091 37888
AFQ95936.1 JX409894_p19 hypothetical protein phrog_1009 unknown function unknown function -1 9456 9743
AFQ95926.1 JX409894_p49 hypothetical protein phrog_20587 unknown function unknown function -1 34517 34642
AFQ95920.1 JX409894_p53 hypothetical protein singleton unknown function unknown function -1 35479 35595
AFQ95967.1 JX409894_p48 hypothetical protein phrog_121 unknown function unknown function -1 33906 34436
AFQ95962.1 JX409894_p35 pahge ClpP protease phrog_94 head maturation protease head and packaging -1 25612 26283
AFQ95944.1 JX409894_p50 hypothetical protein phrog_1027 unknown function unknown function -1 34639 34869
AFQ95914.1 JX409894_p46 hypothetical protein phrog_2397 unknown function unknown function -1 33366 33584
AFQ95964.1 JX409894_p39 phage terminase large subunit phrog_9 terminase large subunit head and packaging -1 28089 29843
AFQ95939.1 JX409894_p25 tail tape measure protein phrog_1293 tail length tape measure protein tail -1 17610 21551
AFQ95934.1 JX409894_p13 CsbD-like family phrog_4133 unknown function unknown function -1 6108 6308
AFQ95929.1 JX409894_p3 hypothetical protein phrog_37088 unknown function unknown function 1 899 1111
AFQ95966.1 JX409894_p43 phage encoded transcriptional regulator ArpU family phrog_248 transcriptional activator transcription regulation -1 32242 32676
AFQ95961.1 JX409894_p34 phage major head capsid protein phrog_10 major head protein head and packaging -1 24399 25574
AFQ95968.1 JX409894_p52 hypothetical protein phrog_98 unknown function unknown function -1 35078 35482
AFQ95917.1 JX409894_p7 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 2778 2990
AFQ95941.1 JX409894_p31 hypothetical protein phrog_25 head closure Hc1 connector -1 23575 23907
AFQ95965.1 JX409894_p40 phage terminase small subunit phrog_83 terminase small subunit head and packaging -1 29858 30325