| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX409895 |
Definition |
Streptococcus phage JX01, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
43028 |
Host Name |
Streptococcus agalactiae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
36.8 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFQ95984.1 | JX409895_p61 | hypothetical protein | phrog_12526 | unknown function | unknown function | -1 | 36071 | 36232 |
| AFQ96028.1 | JX409895_p36 | repressor protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 14601 | 15350 |
| AFQ96042.1 | JX409895_p69 | phage terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 41705 | 42172 |
| AFQ95982.1 | JX409895_p45 | hypothetical protein | phrog_16966 | unknown function | unknown function | -1 | 20922 | 21038 |
| AFQ96002.1 | JX409895_p25 | hypothetical protein | phrog_5281 | unknown function | unknown function | -1 | 10941 | 11165 |
| AFQ96019.1 | JX409895_p70 | phage HNH endonuclease | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 42345 | 42680 |
| AFQ96010.1 | JX409895_p37 | hypothetical protein | phrog_1412 | antitoxin mazE-like | moron, auxiliary metabolic gene and host takeover | 1 | 15400 | 16149 |
| AFQ96025.1 | JX409895_p19 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 7662 | 8120 |
| AFQ96022.1 | JX409895_p15 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 4814 | 5131 |
| AFQ95980.1 | JX409895_p6 | hypothetical protein | phrog_2397 | unknown function | unknown function | -1 | 2184 | 2429 |
| AFQ96038.1 | JX409895_p62 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 36246 | 37421 |
| AFQ96001.1 | JX409895_p23 | hypothetical protein | phrog_5987 | unknown function | unknown function | -1 | 10432 | 10632 |
| AFQ95999.1 | JX409895_p17 | DNA primase | phrog_12939 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 6359 | 6856 |
| AFQ96005.1 | JX409895_p28 | hypothetical protein | phrog_37088 | unknown function | unknown function | 1 | 11866 | 12078 |
| AFQ95977.1 | JX409895_p1 | hypothetical protein | phrog_38755 | unknown function | unknown function | -1 | 398 | 610 |
| AFQ95990.1 | JX409895_p58 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 35048 | 35425 |
| AFQ95998.1 | JX409895_p12 | hypothetical protein | phrog_98 | unknown function | unknown function | -1 | 3896 | 4300 |
| AFQ96029.1 | JX409895_p44 | lysin | phrog_291 | endolysin | lysis | -1 | 19590 | 20921 |
| AFQ96007.1 | JX409895_p30 | hypothetical protein | phrog_633 | transcriptional regulator | transcription regulation | -1 | 12305 | 12637 |
| AFQ96040.1 | JX409895_p64 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 38099 | 39304 |
| AFQ96016.1 | JX409895_p55 | hypothetical protein | phrog_187 | head-tail adaptor | connector | -1 | 33608 | 33928 |
| AFQ95996.1 | JX409895_p10 | hypothetical protein | phrog_1027 | unknown function | unknown function | -1 | 3457 | 3687 |
| AFQ96024.1 | JX409895_p18 | DNA primase/polymerase N-termial domain protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 6846 | 7658 |
| AFQ96035.1 | JX409895_p53 | phage tape measure protein | phrog_1293 | tail length tape measure protein | tail | -1 | 29457 | 33398 |
| AFQ96018.1 | JX409895_p59 | head-tail adaptor protein | phrog_25 | head closure Hc1 | connector | -1 | 35422 | 35754 |
| AFQ96013.1 | JX409895_p41 | CsbD-like family | phrog_4133 | unknown function | unknown function | -1 | 17956 | 18156 |
| AFQ96027.1 | JX409895_p21 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 9467 | 10159 |
| AFQ95986.1 | JX409895_p31 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 12672 | 12887 |
| AFQ95995.1 | JX409895_p7 | hypothetical protein | phrog_2275 | unknown function | unknown function | -1 | 2420 | 2737 |
| AFQ96015.1 | JX409895_p48 | hypothetical protein | phrog_1567 | unknown function | unknown function | -1 | 21609 | 21821 |
| AFQ96006.1 | JX409895_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12075 | 12200 |
| AFQ95985.1 | JX409895_p24 | transcriptional regulator, Cro/CI family | phrog_8 | transcriptional regulator | transcription regulation | -1 | 10625 | 10975 |
| AFQ95992.1 | JX409895_p9 | hypothetical protein | phrog_20587 | unknown function | unknown function | -1 | 3335 | 3460 |
| AFQ95993.1 | JX409895_p13 | hypothetical protein | phrog_3627 | unknown function | unknown function | -1 | 4297 | 4455 |
| AFQ96036.1 | JX409895_p56 | major tail protein | phrog_88 | major tail protein | tail | -1 | 34035 | 34610 |
| AFQ96004.1 | JX409895_p27 | DNA-binding phage protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 11535 | 11720 |
| AFQ96012.1 | JX409895_p40 | hypothetical protein | phrog_2133 | unknown function | unknown function | -1 | 17665 | 17844 |
| AFQ95989.1 | JX409895_p43 | ATPase | phrog_3364 | unknown function | unknown function | -1 | 18753 | 19454 |
| AFQ96030.1 | JX409895_p46 | holin | phrog_297 | holin | lysis | -1 | 21047 | 21301 |
| AFQ96037.1 | JX409895_p60 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 35766 | 36068 |
| AFQ95975.1 | JX409895_p66 | hypothetical protein | phrog_15305 | unknown function | unknown function | -1 | 39515 | 39775 |
| AFQ96008.1 | JX409895_p32 | hypothetical protein | phrog_12396 | unknown function | unknown function | 1 | 12938 | 13579 |
| AFQ95979.1 | JX409895_p4 | hypothetical protein | phrog_32555 | unknown function | unknown function | -1 | 1880 | 2020 |
| AFQ95983.1 | JX409895_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33411 | 33524 |
| AFQ96026.1 | JX409895_p20 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 8136 | 9365 |
| AFQ95994.1 | JX409895_p35 | hypothetical protein | phrog_9031 | unknown function | unknown function | -1 | 14095 | 14244 |
| AFQ95997.1 | JX409895_p14 | hypothetical protein | phrog_1485 | unknown function | unknown function | -1 | 4439 | 4735 |
| AFQ96009.1 | JX409895_p33 | hypothetical protein | phrog_2253 | unknown function | unknown function | -1 | 13677 | 13835 |
| AFQ95987.1 | JX409895_p34 | hypothetical protein | phrog_6930 | unknown function | unknown function | 1 | 13894 | 14106 |
| AFQ96003.1 | JX409895_p26 | hypothetical protein | phrog_5866 | unknown function | unknown function | -1 | 11167 | 11457 |
| AFQ96017.1 | JX409895_p57 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 34626 | 35051 |
| AFQ96020.1 | JX409895_p3 | phage encoded transcriptional regulator, ArpU family | phrog_248 | transcriptional activator | transcription regulation | -1 | 1060 | 1494 |
| AFQ95988.1 | JX409895_p42 | hypothetical protein | phrog_9989 | unknown function | unknown function | -1 | 18266 | 18565 |
| AFQ95981.1 | JX409895_p11 | hypothetical protein | phrog_13248 | unknown function | unknown function | -1 | 3684 | 3899 |
| AFQ95976.1 | JX409895_p67 | hypothetical protein | phrog_502 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 39778 | 39936 |
| AFQ96011.1 | JX409895_p38 | integrase | phrog_1 | integrase | integration and excision | 1 | 16417 | 17274 |
| AFQ95978.1 | JX409895_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 578 | 862 |
| AFQ96014.1 | JX409895_p47 | hypothetical protein | phrog_1009 | unknown function | unknown function | -1 | 21303 | 21590 |
| AFQ96034.1 | JX409895_p52 | minor structural protein | phrog_202 | distal tail protein Dit | tail | -1 | 27949 | 29460 |
| AFQ96039.1 | JX409895_p63 | phage ClpP protease | phrog_94 | head maturation protease | head and packaging | -1 | 37459 | 38130 |
| AFQ96021.1 | JX409895_p8 | hypothetical protein | phrog_121 | unknown function | unknown function | -1 | 2724 | 3254 |
| AFQ96041.1 | JX409895_p68 | phage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 39936 | 41690 |
| AFQ95991.1 | JX409895_p5 | hypothetical protein | phrog_37319 | unknown function | unknown function | -1 | 2020 | 2187 |
| AFQ96033.1 | JX409895_p51 | minor structural protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 24140 | 27910 |
| AFQ96023.1 | JX409895_p16 | DNA primase | phrog_7601 | unknown function | unknown function | -1 | 5376 | 6296 |
| AFQ96000.1 | JX409895_p22 | hypothetical protein | phrog_4084 | unknown function | unknown function | -1 | 10146 | 10394 |
| AFQ95973.1 | JX409895_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17325 | 17486 |
| AFQ96031.1 | JX409895_p49 | hypothetical protein | phrog_1060 | unknown function | unknown function | -1 | 21796 | 22122 |
| AFQ95974.1 | JX409895_p65 | hypothetical protein | phrog_30491 | unknown function | unknown function | -1 | 39358 | 39504 |
| AFQ96032.1 | JX409895_p50 | minor structural protein | phrog_372 | tail protein | tail | -1 | 22136 | 24127 |