| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX411620 |
Definition |
Mycobacterium phage Dorothy, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus. |
DB of origin |
PVOG |
Length |
58866 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
104 |
%GC |
61.4 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFQ97502.1 | JX411620_p48 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 36366 | 36557 |
| AFQ97410.1 | JX411620_p14 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9465 | 12971 |
| AFQ97446.1 | JX411620_p55 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 38358 | 38852 |
| AFQ97485.1 | JX411620_p100 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55679 | 55921 |
| AFQ97461.1 | JX411620_p71 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 44271 | 44831 |
| AFQ97473.1 | JX411620_p84 | hypothetical protein | phrog_6727 | unknown function | unknown function | 1 | 51617 | 51805 |
| AFQ97494.1 | JX411620_p82 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 50681 | 51043 |
| AFQ97402.1 | JX411620_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3596 | 4351 |
| AFQ97431.1 | JX411620_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30470 | 30562 |
| AFQ97414.1 | JX411620_p19 | D-Ala-D-Ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19892 | 21781 |
| AFQ97503.1 | JX411620_p89 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52728 | 52865 |
| AFQ97501.1 | JX411620_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30166 | 30477 |
| AFQ97445.1 | JX411620_p53 | hypothetical protein | phrog_7605 | unknown function | unknown function | 1 | 37831 | 38019 |
| AFQ97482.1 | JX411620_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 54766 | 54930 |
| AFQ97465.1 | JX411620_p75 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 45729 | 48410 |
| AFQ97481.1 | JX411620_p95 | HTH DNA binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 54545 | 54769 |
| AFQ97490.1 | JX411620_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7537 | 8418 |
| AFQ97499.1 | JX411620_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16516 | 17361 |
| AFQ97504.1 | JX411620_p46 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 36083 | 36175 |
| AFQ97416.1 | JX411620_p21 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22955 | 23296 |
| AFQ97409.1 | JX411620_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8532 | 9083 |
| AFQ97415.1 | JX411620_p20 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21778 | 22941 |
| AFQ97438.1 | JX411620_p44 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 34870 | 35874 |
| AFQ97421.1 | JX411620_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25397 | 25681 |
| AFQ97454.1 | JX411620_p63 | hypothetical protein | phrog_4657 | unknown function | unknown function | 1 | 41656 | 42264 |
| AFQ97469.1 | JX411620_p79 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 49653 | 50033 |
| AFQ97496.1 | JX411620_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 571 | 2208 |
| AFQ97424.1 | JX411620_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26057 | 26290 |
| AFQ97467.1 | JX411620_p77 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 48545 | 49396 |
| AFQ97500.1 | JX411620_p99 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55281 | 55682 |
| AFQ97483.1 | JX411620_p97 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 54937 | 55095 |
| AFQ97417.1 | JX411620_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23319 | 23573 |
| AFQ97401.1 | JX411620_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 108 | 563 |
| AFQ97412.1 | JX411620_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14766 | 16475 |
| AFQ97497.1 | JX411620_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2239 | 3609 |
| AFQ97439.1 | JX411620_p45 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 35871 | 36086 |
| AFQ97404.1 | JX411620_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5047 | 5868 |
| AFQ97418.1 | JX411620_p23 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23587 | 24225 |
| AFQ97434.1 | JX411620_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 31738 | 33039 |
| AFQ97407.1 | JX411620_p9 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6779 | 7105 |
| AFQ97426.1 | JX411620_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27483 | 28484 |
| AFQ97491.1 | JX411620_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8532 | 9468 |
| AFQ97495.1 | JX411620_p90 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52918 | 53037 |
| AFQ97436.1 | JX411620_p42 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 33840 | 34460 |
| AFQ97413.1 | JX411620_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17358 | 19895 |
| AFQ97466.1 | JX411620_p76 | DNA methylase | phrog_2451 | unknown function | unknown function | 1 | 48407 | 48541 |
| AFQ97471.1 | JX411620_p81 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 50224 | 50574 |
| AFQ97489.1 | JX411620_p104 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57744 | 58367 |
| AFQ97474.1 | JX411620_p85 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 51802 | 51978 |
| AFQ97422.1 | JX411620_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25688 | 25834 |
| AFQ97440.1 | JX411620_p47 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36172 | 36369 |
| AFQ97443.1 | JX411620_p51 | hypothetical protein | phrog_8015 | unknown function | unknown function | 1 | 37196 | 37477 |
| AFQ97419.1 | JX411620_p24 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24222 | 25046 |
| AFQ97464.1 | JX411620_p74 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 45505 | 45732 |
| AFQ97455.1 | JX411620_p65 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 42620 | 42865 |
| AFQ97444.1 | JX411620_p52 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 37553 | 37834 |
| AFQ97458.1 | JX411620_p68 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 43156 | 43311 |
| AFQ97405.1 | JX411620_p7 | hypothetical protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5877 | 6446 |
| AFQ97433.1 | JX411620_p39 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31139 | 31342 |
| AFQ97452.1 | JX411620_p61 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 40350 | 40685 |
| AFQ97451.1 | JX411620_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40123 | 40353 |
| AFQ97468.1 | JX411620_p78 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 49393 | 49656 |
| AFQ97493.1 | JX411620_p64 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42261 | 42623 |
| AFQ97478.1 | JX411620_p91 | hypothetical protein | phrog_10901 | unknown function | unknown function | 1 | 53034 | 53309 |
| AFQ97430.1 | JX411620_p35 | DnaQ-like protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29348 | 30169 |
| AFQ97498.1 | JX411620_p93 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 53555 | 53803 |
| AFQ97442.1 | JX411620_p50 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 36735 | 37178 |
| AFQ97463.1 | JX411620_p73 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 45386 | 45508 |
| AFQ97411.1 | JX411620_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 12972 | 14681 |
| AFQ97460.1 | JX411620_p70 | hypothetical protein | phrog_6650 | unknown function | unknown function | 1 | 43879 | 44274 |
| AFQ97423.1 | JX411620_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25831 | 25983 |
| AFQ97477.1 | JX411620_p88 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52513 | 52677 |
| AFQ97479.1 | JX411620_p92 | hypothetical protein | phrog_6816 | unknown function | unknown function | 1 | 53309 | 53551 |
| AFQ97408.1 | JX411620_p10 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 7095 | 7499 |
| AFQ97470.1 | JX411620_p80 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 50033 | 50227 |
| AFQ97486.1 | JX411620_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 55914 | 56075 |
| AFQ97453.1 | JX411620_p62 | hypothetical protein | phrog_1366 | unknown function | unknown function | 1 | 40682 | 41659 |
| AFQ97428.1 | JX411620_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28730 | 29104 |
| AFQ97425.1 | JX411620_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26287 | 27483 |
| AFQ97429.1 | JX411620_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29101 | 29361 |
| AFQ97480.1 | JX411620_p94 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 53800 | 54435 |
| AFQ97488.1 | JX411620_p103 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57541 | 57747 |
| AFQ97406.1 | JX411620_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6443 | 6772 |
| AFQ97462.1 | JX411620_p72 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 44809 | 45360 |
| AFQ97456.1 | JX411620_p66 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 42862 | 43011 |
| AFQ97459.1 | JX411620_p69 | hypothetical protein | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 43304 | 43882 |
| AFQ97441.1 | JX411620_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36554 | 36733 |
| AFQ97457.1 | JX411620_p67 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 43008 | 43178 |
| AFQ97448.1 | JX411620_p57 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 39331 | 39609 |
| AFQ97403.1 | JX411620_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4378 | 5028 |
| AFQ97484.1 | JX411620_p98 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 55117 | 55284 |
| AFQ97420.1 | JX411620_p25 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25051 | 25248 |
| AFQ97476.1 | JX411620_p87 | hypothetical protein | phrog_12283 | unknown function | unknown function | 1 | 52163 | 52516 |
| AFQ97427.1 | JX411620_p32 | holin | phrog_443 | holin | lysis | 1 | 28500 | 28733 |
| AFQ97447.1 | JX411620_p56 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 38849 | 39334 |
| AFQ97437.1 | JX411620_p43 | HTH DNA binding domain protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34579 | 34812 |
| AFQ97435.1 | JX411620_p41 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33121 | 33576 |
| AFQ97450.1 | JX411620_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 39971 | 40123 |
| AFQ97475.1 | JX411620_p86 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51975 | 52166 |
| AFQ97432.1 | JX411620_p38 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 30798 | 31139 |
| AFQ97472.1 | JX411620_p83 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51040 | 51411 |
| AFQ97487.1 | JX411620_p102 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56102 | 57538 |
| AFQ97492.1 | JX411620_p54 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38023 | 38358 |
| AFQ97449.1 | JX411620_p58 | HTH DNA binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39606 | 39971 |