Genomic map of Rhizobium phage RHEph01 (JX483873)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX483873
Definition
Rhizobium phage RHEph01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Paadamvirus; Rhizobium virus RHEph01.
DB of origin
PVOG
Length
43444
Host Name
Rhizobium etli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
59.17
Number of singletons
26
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGC35559.1 JX483873_p48 hypothetical protein singleton unknown function unknown function 1 38092 38391
AGC35526.1 JX483873_p15 hypothetical protein singleton unknown function unknown function 1 9466 10287
AGC35557.1 JX483873_p46 T7-like tail fiber protein phrog_26630 tail fiber protein tail 1 36571 37812
AGC35549.1 JX483873_p38 hypothetical protein singleton unknown function unknown function 1 24748 25008
AGC35540.1 JX483873_p29 hypothetical protein singleton unknown function unknown function 1 19503 19661
AGC35548.1 JX483873_p37 minor capsid protein phrog_267 major head protein head and packaging 1 23696 24673
AGC35552.1 JX483873_p41 tail tubular protein B phrog_457 tail protein tail 1 27313 29694
AGC35547.1 JX483873_p36 hypothetical protein singleton unknown function unknown function 1 23122 23352
AGC35536.1 JX483873_p25 hypothetical protein singleton unknown function unknown function 1 17521 17718
AGC35516.1 JX483873_p5 hypothetical protein singleton unknown function unknown function 1 2157 2384
AGC35523.1 JX483873_p12 hypothetical protein singleton unknown function unknown function 1 8394 8555
AGC35517.1 JX483873_p6 hypothetical protein singleton unknown function unknown function 1 2384 2548
AGC35530.1 JX483873_p19 hypothetical protein singleton unknown function unknown function 1 12209 12880
AGC35541.1 JX483873_p30 hypothetical protein phrog_4970 unknown function unknown function 1 19712 19918
AGC35542.1 JX483873_p31 hypothetical protein singleton unknown function unknown function 1 19919 20149
AGC35522.1 JX483873_p11 prophage antirepressor protein, BRO family phrog_2899 anti-repressor Ant transcription regulation 1 7853 8344
AGC35554.1 JX483873_p43 internal virion protein phrog_805 internal virion protein head and packaging 1 30151 30693
AGC35539.1 JX483873_p28 hypothetical protein singleton unknown function unknown function 1 19045 19506
AGC35545.1 JX483873_p34 hypothetical protein singleton unknown function unknown function 1 21829 22329
AGC35538.1 JX483873_p27 deoxynucleotide monophosphate kinase protein phrog_139 deoxynucleoside monophosphate kinase other 1 18454 19020
AGC35531.1 JX483873_p20 hypothetical protein singleton unknown function unknown function 1 12877 13074
AGC35520.1 JX483873_p9 integrase protein phrog_1 integrase integration and excision 1 3723 4736
AGC35558.1 JX483873_p47 hypothetical protein singleton unknown function unknown function 1 37961 38095
AGC35519.1 JX483873_p8 transcriptional regulator protein, MarR family protein phrog_9665 transcriptional regulator transcription regulation 1 3248 3634
AGC35525.1 JX483873_p14 hypothetical protein singleton unknown function unknown function 1 9256 9432
AGC35560.1 JX483873_p49 hypothetical protein singleton unknown function unknown function 1 38391 38639
AGC35513.1 JX483873_p2 hypothetical protein singleton unknown function unknown function -1 469 714
AGC35561.1 JX483873_p50 hypothetical protein phrog_891 terminase small subunit head and packaging 1 38639 38860
AGC35546.1 JX483873_p35 T7-like capsid assembly protein phrog_1052 head assembly head and packaging 1 22339 23112
AGC35527.1 JX483873_p16 phage single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10375 11085
AGC35518.1 JX483873_p7 hypothetical protein singleton unknown function unknown function 1 3030 3185
AGC35555.1 JX483873_p44 hypothetical protein singleton unknown function unknown function 1 30693 32717
AGC35532.1 JX483873_p21 DNA primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 13235 14704
AGC35553.1 JX483873_p42 internal virion protein phrog_308 internal virion protein head and packaging 1 29694 30161
AGC35564.1 JX483873_p53 hypothetical protein singleton unknown function unknown function 1 41324 42199
AGC35535.1 JX483873_p24 hypothetical protein singleton unknown function unknown function 1 17120 17521
AGC35562.1 JX483873_p51 terminase protein large subunit phrog_38 terminase large subunit head and packaging 1 38986 40674
AGC35563.1 JX483873_p52 hypothetical protein phrog_3716 unknown function unknown function 1 40906 41319
AGC35514.1 JX483873_p3 hypothetical protein singleton unknown function unknown function 1 771 947
AGC35556.1 JX483873_p45 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32727 36500
AGC35533.1 JX483873_p22 DNA-directed DNA polymerase protein, family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 14873 16837
AGC35566.1 JX483873_p55 hypothetical protein singleton unknown function unknown function -1 42494 42991
AGC35521.1 JX483873_p10 DNA-dependent RNA polymerase protein phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 5163 7739
AGC35537.1 JX483873_p26 5'-3' exonuclease protein phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17711 18475
AGC35529.1 JX483873_p18 lysozyme protein phrog_822 amidase lysis 1 11505 12116
AGC35544.1 JX483873_p33 hypothetical protein singleton unknown function unknown function 1 21672 21818
AGC35543.1 JX483873_p32 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 20159 21709
AGC35550.1 JX483873_p39 hypothetical protein phrog_8480 lysophospholipase L1-like esterase other 1 25016 26638
AGC35528.1 JX483873_p17 endonuclease I protein phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11093 11503
AGC35524.1 JX483873_p13 hypothetical protein phrog_1843 unknown function unknown function 1 8567 9256
AGC35565.1 JX483873_p54 hypothetical protein singleton unknown function unknown function -1 42238 42510
AGC35512.1 JX483873_p1 hypothetical protein phrog_29049 unknown function unknown function 1 51 299
AGC35551.1 JX483873_p40 tail tubular protein A phrog_446 tail protein tail 1 26702 27313
AGC35534.1 JX483873_p23 hypothetical protein phrog_1334 unknown function unknown function 1 16841 17047
AGC35515.1 JX483873_p4 hypothetical protein phrog_7247 unknown function unknown function 1 1088 2053
AGC35567.1 JX483873_p56 hypothetical protein phrog_29049 unknown function unknown function 1 42983 43231