Genomic map of Acidithiobacillus phage AcaML1 (JX507079)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX507079
Definition
Acidithiobacillus phage AcaML1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae.
DB of origin
PVOG
Length
59363
Host Name
Acidithiobacillus caldus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
71
%GC
65.47
Number of singletons
19
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFU62881.1 JX507079_p36 portal protein phrog_21 portal protein head and packaging 1 24379 25836
AFU62910.1 JX507079_p65 site specific DNA modification methylase Dcm phrog_116 DNA methyltransferase other 1 49572 50921
AFU62861.1 JX507079_p16 hypothetical protein singleton unknown function unknown function 1 11142 11396
AFU62853.1 JX507079_p8 excisionase singleton unknown function unknown function -1 6139 6600
AFU62855.1 JX507079_p10 hypothetical protein phrog_2480 unknown function unknown function 1 7101 7580
AFU62908.1 JX507079_p63 hypothetical protein phrog_6637 unknown function unknown function 1 48288 48764
AFU62886.1 JX507079_p41 hypothetical protein phrog_20428 tail terminator connector 1 28855 29406
AFU62851.1 JX507079_p6 hypothetical protein singleton unknown function unknown function -1 3281 5536
AFU62894.1 JX507079_p49 hypothetical protein phrog_20381 unknown function unknown function 1 36910 37158
AFU62848.1 JX507079_p3 site specific recombinase large subunit phrog_95 integrase integration and excision -1 1163 2542
AFU62895.1 JX507079_p50 hypothetical protein singleton unknown function unknown function 1 37155 37700
AFU62893.1 JX507079_p48 hypothetical protein phrog_877 unknown function unknown function 1 33742 36897
AFU62911.1 JX507079_p66 5-methylcytosine specific restriction system component McrB singleton unknown function unknown function 1 50982 52964
AFU62862.1 JX507079_p17 DNA primase phrog_6088 DNA primase DNA, RNA and nucleotide metabolism 1 11393 13693
AFU62912.1 JX507079_p67 5-methylcytosine specific restriction system component McrC singleton unknown function unknown function 1 52942 54267
AFU62888.1 JX507079_p43 PAAR repeat-containing protein phrog_281 PAAR motif of membran proteins moron, auxiliary metabolic gene and host takeover 1 29879 30187
AFU62875.1 JX507079_p30 hypothetical protein singleton unknown function unknown function -1 20791 21153
AFU62898.1 JX507079_p53 hypothetical protein singleton unknown function unknown function 1 39442 39894
AFU62876.1 JX507079_p31 hypothetical protein singleton unknown function unknown function -1 21143 21340
AFU62916.1 JX507079_p71 transposase singleton unknown function unknown function 1 58696 59247
AFU62885.1 JX507079_p40 hypothetical protein phrog_82 head closure Hc1 connector 1 28523 28858
AFU62857.1 JX507079_p12 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8357 9187
AFU62877.1 JX507079_p32 hypothetical protein phrog_10315 unknown function unknown function -1 21337 21933
AFU62884.1 JX507079_p39 major capsid protein phrog_29 major head protein head and packaging 1 27501 28529
AFU62891.1 JX507079_p46 phage baseplate assembly protein gpI phrog_17612 tail protein tail 1 31432 33003
AFU62866.1 JX507079_p21 hypothetical protein singleton unknown function unknown function 1 15124 15411
AFU62901.1 JX507079_p56 phage tail tube protein FII phrog_55 head closure connector 1 41813 42325
AFU62872.1 JX507079_p27 hypothetical protein singleton unknown function unknown function -1 19815 20021
AFU62873.1 JX507079_p28 hypothetical protein phrog_8020 unknown function unknown function -1 20032 20397
AFU62892.1 JX507079_p47 hypothetical protein phrog_1394 virion structural protein head and packaging 1 33037 33729
AFU62846.1 JX507079_p1 hypothetical protein phrog_14161 recombinase other -1 313 786
AFU62868.1 JX507079_p23 hypothetical protein phrog_57 terminase small subunit head and packaging 1 16261 16794
AFU62882.1 JX507079_p37 periplasmic serine proteases (ClpP class) phrog_53 head maturation protease head and packaging 1 25839 27101
AFU62847.1 JX507079_p2 site specific recombinase small subunit phrog_14161 recombinase other -1 783 1166
AFU62904.1 JX507079_p59 phage tail formation protein U phrog_76 tail protein tail 1 45850 46719
AFU62859.1 JX507079_p14 hypothetical protein phrog_21342 unknown function unknown function 1 9881 10402
AFU62854.1 JX507079_p9 transcriptional regulator phrog_66 excisionase and transcriptional regulator integration and excision 1 6827 7090
AFU62887.1 JX507079_p42 phage baseplate assembly protein gpV phrog_11 baseplate spike tail 1 29403 29879
AFU62903.1 JX507079_p58 phage tail length tape measure protein phrog_28 tail length tape measure protein tail 1 42739 45819
AFU62913.1 JX507079_p68 transposase singleton unknown function unknown function 1 55074 55967
AFU62914.1 JX507079_p69 transposase IstA, IS21 family phrog_1157 transposase integration and excision 1 56157 57716
AFU62902.1 JX507079_p57 hypothetical protein phrog_166 tail protein tail 1 42338 42586
AFU62889.1 JX507079_p44 phage baseplate assembly protein gpW phrog_43 baseplate wedge subunit tail 1 30184 30543
AFU62867.1 JX507079_p22 hypothetical protein phrog_1924 minor tail protein tail 1 15398 15967
AFU62869.1 JX507079_p24 DNA modification methylase phrog_498 DNA methyltransferase other 1 16791 18323
AFU62852.1 JX507079_p7 hypothetical protein singleton unknown function unknown function -1 5562 6134
AFU62905.1 JX507079_p61 phage tail protein X phrog_52 tail protein tail 1 46953 48020
AFU62874.1 JX507079_p29 hypothetical protein singleton unknown function unknown function -1 20407 20787
AFU62906.1 JX507079_p60 phage late control protein D phrog_46 baseplate hub tail 1 46719 46949
AFU62897.1 JX507079_p52 hypothetical protein singleton unknown function unknown function 1 38033 39445
AFU62896.1 JX507079_p51 phage tail fiber-like protein phrog_1276 unknown function unknown function 1 37722 38033
AFU62871.1 JX507079_p26 hypothetical protein phrog_4276 unknown function unknown function 1 19603 19839
AFU62858.1 JX507079_p13 hypothetical protein phrog_2300 unknown function unknown function 1 9191 9817
AFU62849.1 JX507079_p4 hypothetical protein phrog_11806 unknown function unknown function -1 2542 2985
AFU62863.1 JX507079_p18 polynucleotidyltransferase phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 13834 14301
AFU62865.1 JX507079_p20 hypothetical protein singleton unknown function unknown function 1 14552 15079
AFU62900.1 JX507079_p55 phage tail sheath protein FI phrog_23 tail sheath tail 1 40305 41801
AFU62860.1 JX507079_p15 hypothetical protein phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism 1 10399 11145
AFU62856.1 JX507079_p11 prophage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 7584 8357
AFU62878.1 JX507079_p33 terminase small subunit gpNu1 singleton unknown function unknown function 1 22018 22479
AFU62899.1 JX507079_p54 hypothetical protein phrog_34710 unknown function unknown function 1 39891 40223
AFU62915.1 JX507079_p70 transposition helper protein IstB, IS21 family phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 57739 58473
AFU62879.1 JX507079_p34 packaging terminase large subunit gpA phrog_15 terminase large subunit head and packaging 1 22476 24173
AFU62890.1 JX507079_p45 phage baseplate assembly protein gpJ phrog_6 baseplate wedge subunit tail 1 30540 31394
AFU62850.1 JX507079_p5 hypothetical protein singleton unknown function unknown function -1 2985 3176
AFU62883.1 JX507079_p38 hypothetical protein phrog_49 head decoration head and packaging 1 27098 27487
AFU62909.1 JX507079_p64 phage related lysozyme phrog_7 endolysin lysis 1 48704 49243
AFU62864.1 JX507079_p19 hypothetical protein phrog_19772 unknown function unknown function 1 14298 14555
AFU62907.1 JX507079_p62 hypothetical protein phrog_10540 unknown function unknown function 1 48007 48291
AFU62870.1 JX507079_p25 DNA modification methylase phrog_498 DNA methyltransferase other 1 18320 19606
AFU62880.1 JX507079_p35 hypothetical protein phrog_2545 head-tail adaptor Ad1 connector 1 24170 24382