| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX507079 |
Definition |
Acidithiobacillus phage AcaML1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae. |
DB of origin |
PVOG |
Length |
59363 |
Host Name |
Acidithiobacillus caldus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
65.47 |
Number of singletons |
19 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFU62881.1 | JX507079_p36 | portal protein | phrog_21 | portal protein | head and packaging | 1 | 24379 | 25836 |
| AFU62910.1 | JX507079_p65 | site specific DNA modification methylase Dcm | phrog_116 | DNA methyltransferase | other | 1 | 49572 | 50921 |
| AFU62861.1 | JX507079_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11142 | 11396 |
| AFU62853.1 | JX507079_p8 | excisionase | singleton | unknown function | unknown function | -1 | 6139 | 6600 |
| AFU62855.1 | JX507079_p10 | hypothetical protein | phrog_2480 | unknown function | unknown function | 1 | 7101 | 7580 |
| AFU62908.1 | JX507079_p63 | hypothetical protein | phrog_6637 | unknown function | unknown function | 1 | 48288 | 48764 |
| AFU62886.1 | JX507079_p41 | hypothetical protein | phrog_20428 | tail terminator | connector | 1 | 28855 | 29406 |
| AFU62851.1 | JX507079_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3281 | 5536 |
| AFU62894.1 | JX507079_p49 | hypothetical protein | phrog_20381 | unknown function | unknown function | 1 | 36910 | 37158 |
| AFU62848.1 | JX507079_p3 | site specific recombinase large subunit | phrog_95 | integrase | integration and excision | -1 | 1163 | 2542 |
| AFU62895.1 | JX507079_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37155 | 37700 |
| AFU62893.1 | JX507079_p48 | hypothetical protein | phrog_877 | unknown function | unknown function | 1 | 33742 | 36897 |
| AFU62911.1 | JX507079_p66 | 5-methylcytosine specific restriction system component McrB | singleton | unknown function | unknown function | 1 | 50982 | 52964 |
| AFU62862.1 | JX507079_p17 | DNA primase | phrog_6088 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 11393 | 13693 |
| AFU62912.1 | JX507079_p67 | 5-methylcytosine specific restriction system component McrC | singleton | unknown function | unknown function | 1 | 52942 | 54267 |
| AFU62888.1 | JX507079_p43 | PAAR repeat-containing protein | phrog_281 | PAAR motif of membran proteins | moron, auxiliary metabolic gene and host takeover | 1 | 29879 | 30187 |
| AFU62875.1 | JX507079_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20791 | 21153 |
| AFU62898.1 | JX507079_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39442 | 39894 |
| AFU62876.1 | JX507079_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21143 | 21340 |
| AFU62916.1 | JX507079_p71 | transposase | singleton | unknown function | unknown function | 1 | 58696 | 59247 |
| AFU62885.1 | JX507079_p40 | hypothetical protein | phrog_82 | head closure Hc1 | connector | 1 | 28523 | 28858 |
| AFU62857.1 | JX507079_p12 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8357 | 9187 |
| AFU62877.1 | JX507079_p32 | hypothetical protein | phrog_10315 | unknown function | unknown function | -1 | 21337 | 21933 |
| AFU62884.1 | JX507079_p39 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 27501 | 28529 |
| AFU62891.1 | JX507079_p46 | phage baseplate assembly protein gpI | phrog_17612 | tail protein | tail | 1 | 31432 | 33003 |
| AFU62866.1 | JX507079_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15124 | 15411 |
| AFU62901.1 | JX507079_p56 | phage tail tube protein FII | phrog_55 | head closure | connector | 1 | 41813 | 42325 |
| AFU62872.1 | JX507079_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19815 | 20021 |
| AFU62873.1 | JX507079_p28 | hypothetical protein | phrog_8020 | unknown function | unknown function | -1 | 20032 | 20397 |
| AFU62892.1 | JX507079_p47 | hypothetical protein | phrog_1394 | virion structural protein | head and packaging | 1 | 33037 | 33729 |
| AFU62846.1 | JX507079_p1 | hypothetical protein | phrog_14161 | recombinase | other | -1 | 313 | 786 |
| AFU62868.1 | JX507079_p23 | hypothetical protein | phrog_57 | terminase small subunit | head and packaging | 1 | 16261 | 16794 |
| AFU62882.1 | JX507079_p37 | periplasmic serine proteases (ClpP class) | phrog_53 | head maturation protease | head and packaging | 1 | 25839 | 27101 |
| AFU62847.1 | JX507079_p2 | site specific recombinase small subunit | phrog_14161 | recombinase | other | -1 | 783 | 1166 |
| AFU62904.1 | JX507079_p59 | phage tail formation protein U | phrog_76 | tail protein | tail | 1 | 45850 | 46719 |
| AFU62859.1 | JX507079_p14 | hypothetical protein | phrog_21342 | unknown function | unknown function | 1 | 9881 | 10402 |
| AFU62854.1 | JX507079_p9 | transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 6827 | 7090 |
| AFU62887.1 | JX507079_p42 | phage baseplate assembly protein gpV | phrog_11 | baseplate spike | tail | 1 | 29403 | 29879 |
| AFU62903.1 | JX507079_p58 | phage tail length tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 42739 | 45819 |
| AFU62913.1 | JX507079_p68 | transposase | singleton | unknown function | unknown function | 1 | 55074 | 55967 |
| AFU62914.1 | JX507079_p69 | transposase IstA, IS21 family | phrog_1157 | transposase | integration and excision | 1 | 56157 | 57716 |
| AFU62902.1 | JX507079_p57 | hypothetical protein | phrog_166 | tail protein | tail | 1 | 42338 | 42586 |
| AFU62889.1 | JX507079_p44 | phage baseplate assembly protein gpW | phrog_43 | baseplate wedge subunit | tail | 1 | 30184 | 30543 |
| AFU62867.1 | JX507079_p22 | hypothetical protein | phrog_1924 | minor tail protein | tail | 1 | 15398 | 15967 |
| AFU62869.1 | JX507079_p24 | DNA modification methylase | phrog_498 | DNA methyltransferase | other | 1 | 16791 | 18323 |
| AFU62852.1 | JX507079_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5562 | 6134 |
| AFU62905.1 | JX507079_p61 | phage tail protein X | phrog_52 | tail protein | tail | 1 | 46953 | 48020 |
| AFU62874.1 | JX507079_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20407 | 20787 |
| AFU62906.1 | JX507079_p60 | phage late control protein D | phrog_46 | baseplate hub | tail | 1 | 46719 | 46949 |
| AFU62897.1 | JX507079_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38033 | 39445 |
| AFU62896.1 | JX507079_p51 | phage tail fiber-like protein | phrog_1276 | unknown function | unknown function | 1 | 37722 | 38033 |
| AFU62871.1 | JX507079_p26 | hypothetical protein | phrog_4276 | unknown function | unknown function | 1 | 19603 | 19839 |
| AFU62858.1 | JX507079_p13 | hypothetical protein | phrog_2300 | unknown function | unknown function | 1 | 9191 | 9817 |
| AFU62849.1 | JX507079_p4 | hypothetical protein | phrog_11806 | unknown function | unknown function | -1 | 2542 | 2985 |
| AFU62863.1 | JX507079_p18 | polynucleotidyltransferase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 13834 | 14301 |
| AFU62865.1 | JX507079_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14552 | 15079 |
| AFU62900.1 | JX507079_p55 | phage tail sheath protein FI | phrog_23 | tail sheath | tail | 1 | 40305 | 41801 |
| AFU62860.1 | JX507079_p15 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 10399 | 11145 |
| AFU62856.1 | JX507079_p11 | prophage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 7584 | 8357 |
| AFU62878.1 | JX507079_p33 | terminase small subunit gpNu1 | singleton | unknown function | unknown function | 1 | 22018 | 22479 |
| AFU62899.1 | JX507079_p54 | hypothetical protein | phrog_34710 | unknown function | unknown function | 1 | 39891 | 40223 |
| AFU62915.1 | JX507079_p70 | transposition helper protein IstB, IS21 family | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 57739 | 58473 |
| AFU62879.1 | JX507079_p34 | packaging terminase large subunit gpA | phrog_15 | terminase large subunit | head and packaging | 1 | 22476 | 24173 |
| AFU62890.1 | JX507079_p45 | phage baseplate assembly protein gpJ | phrog_6 | baseplate wedge subunit | tail | 1 | 30540 | 31394 |
| AFU62850.1 | JX507079_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2985 | 3176 |
| AFU62883.1 | JX507079_p38 | hypothetical protein | phrog_49 | head decoration | head and packaging | 1 | 27098 | 27487 |
| AFU62909.1 | JX507079_p64 | phage related lysozyme | phrog_7 | endolysin | lysis | 1 | 48704 | 49243 |
| AFU62864.1 | JX507079_p19 | hypothetical protein | phrog_19772 | unknown function | unknown function | 1 | 14298 | 14555 |
| AFU62907.1 | JX507079_p62 | hypothetical protein | phrog_10540 | unknown function | unknown function | 1 | 48007 | 48291 |
| AFU62870.1 | JX507079_p25 | DNA modification methylase | phrog_498 | DNA methyltransferase | other | 1 | 18320 | 19606 |
| AFU62880.1 | JX507079_p35 | hypothetical protein | phrog_2545 | head-tail adaptor Ad1 | connector | 1 | 24170 | 24382 |