Genomic map of Lactococcus phage Q33 (JX564242)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
JX564242
Definition
Lactococcus phage Q33, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
31106
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
36.21
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AFV51046.1 JX564242_p17 hypothetical protein phrog_31257 unknown function unknown function 1 10054 10260
AFV51062.1 JX564242_p33 portal protein phrog_64 portal protein head and packaging 1 16196 17551
AFV51072.1 JX564242_p43 tail tape measure phrog_58 tail length tape measure protein tail 1 24209 26488
AFV51052.1 JX564242_p23 hypothetical protein phrog_22719 unknown function unknown function 1 11759 12019
AFV51070.1 JX564242_p41 tail terminator gpU phrog_957 head protein head and packaging 1 22289 22660
AFV51076.1 JX564242_p47 hypothetical protein phrog_689 holin lysis 1 29519 29743
AFV51068.1 JX564242_p39 head-tail adaptor phrog_1059 head-tail adaptor connector 1 21545 21865
AFV51077.1 JX564242_p48 holin phrog_263 holin lysis 1 29757 30044
AFV51041.1 JX564242_p12 integrase singleton unknown function unknown function -1 5874 6224
AFV51036.1 JX564242_p7 single-stranded binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 3106 3564
AFV51060.1 JX564242_p31 hypothetical protein phrog_2538 terminase small subunit head and packaging 1 14567 14965
AFV51034.1 JX564242_p5 hypothetical protein phrog_4729 unknown function unknown function 1 1951 2346
AFV51045.1 JX564242_p16 hypothetical protein phrog_5609 DNA helicase DNA, RNA and nucleotide metabolism 1 7894 9588
AFV51035.1 JX564242_p6 double-strand break repair protein phrog_1097 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 2355 3113
AFV51049.1 JX564242_p20 hypothetical protein phrog_4314 unknown function unknown function 1 10736 10915
AFV51039.1 JX564242_p10 holliday juntion endonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 5238 5627
AFV51032.1 JX564242_p3 antirepressor-like protein phrog_373 anti-repressor transcription regulation 1 869 1609
AFV51056.1 JX564242_p27 hypothetical protein phrog_4501 unknown function unknown function 1 13181 13423
AFV51033.1 JX564242_p4 hypothetical protein phrog_5450 unknown function unknown function 1 1621 1836
AFV51061.1 JX564242_p32 terminase large subunit phrog_38 terminase large subunit head and packaging 1 14955 16196
AFV51074.1 JX564242_p45 tail structural protein phrog_538 minor tail protein tail 1 27365 28480
AFV51066.1 JX564242_p37 major capsid protein phrog_840 major head protein head and packaging 1 19945 20841
AFV51063.1 JX564242_p34 minor capsid protein phrog_115 minor head protein head and packaging 1 17626 18621
AFV51078.1 JX564242_p49 lysin phrog_998 endolysin lysis 1 30044 30823
AFV51075.1 JX564242_p46 tail structural protein phrog_1220 head protein head and packaging 1 28477 29505
AFV51031.1 JX564242_p2 hypothetical protein phrog_16628 unknown function unknown function 1 641 859
AFV51037.1 JX564242_p8 replication protein phrog_5708 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 3734 4516
AFV51057.1 JX564242_p28 hypothetical protein phrog_2670 unknown function unknown function 1 13420 13614
AFV51079.1 JX564242_p50 hypothetical protein singleton unknown function unknown function 1 30937 31101
AFV51038.1 JX564242_p9 topoisomerase phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 4516 5241
AFV51048.1 JX564242_p19 hypothetical protein singleton unknown function unknown function 1 10591 10701
AFV51051.1 JX564242_p22 hypothetical protein phrog_8486 unknown function unknown function 1 11484 11756
AFV51050.1 JX564242_p21 hypothetical protein phrog_4149 unknown function unknown function 1 10905 11474
AFV51044.1 JX564242_p15 antirepressor phrog_2657 transcriptional regulator transcription regulation 1 7140 7814
AFV51042.1 JX564242_p13 repressor phrog_8 transcriptional regulator transcription regulation -1 6286 6585
AFV51071.1 JX564242_p42 major tail protein phrog_885 major tail protein tail 1 22660 23508
AFV51069.1 JX564242_p40 activator of tail terminator phrog_5 tail completion or Neck1 protein connector 1 21870 22289
AFV51058.1 JX564242_p29 hypothetical protein singleton unknown function unknown function 1 13761 13949
AFV51055.1 JX564242_p26 hypothetical protein phrog_6072 unknown function unknown function 1 12889 13134
AFV51067.1 JX564242_p38 hypothetical protein phrog_1236 head protein head and packaging 1 20977 21543
AFV51073.1 JX564242_p44 tail structural protein phrog_33 distal tail protein Dit tail 1 26491 27363
AFV51054.1 JX564242_p25 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 12378 12800
AFV51064.1 JX564242_p35 scaffolding protein phrog_194 head scaffolding protein head and packaging 1 19067 19669
AFV51040.1 JX564242_p11 hypothetical protein singleton unknown function unknown function 1 5630 5773
AFV51059.1 JX564242_p30 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 13946 14404
AFV51030.1 JX564242_p1 cro-like protein phrog_3 transcriptional repressor transcription regulation 1 390 614
AFV51053.1 JX564242_p24 hypothetical protein phrog_10155 unknown function unknown function 1 12016 12381
AFV51065.1 JX564242_p36 hypothetical protein phrog_13508 unknown function unknown function 1 19681 19929
AFV51043.1 JX564242_p14 cro protein phrog_11187 transcriptional regulator transcription regulation 1 6730 6921
AFV51047.1 JX564242_p18 hypothetical protein phrog_5080 unknown function unknown function 1 10376 10582