| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
JX564242 |
Definition |
Lactococcus phage Q33, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
31106 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
36.21 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AFV51046.1 | JX564242_p17 | hypothetical protein | phrog_31257 | unknown function | unknown function | 1 | 10054 | 10260 |
| AFV51062.1 | JX564242_p33 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 16196 | 17551 |
| AFV51072.1 | JX564242_p43 | tail tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 24209 | 26488 |
| AFV51052.1 | JX564242_p23 | hypothetical protein | phrog_22719 | unknown function | unknown function | 1 | 11759 | 12019 |
| AFV51070.1 | JX564242_p41 | tail terminator gpU | phrog_957 | head protein | head and packaging | 1 | 22289 | 22660 |
| AFV51076.1 | JX564242_p47 | hypothetical protein | phrog_689 | holin | lysis | 1 | 29519 | 29743 |
| AFV51068.1 | JX564242_p39 | head-tail adaptor | phrog_1059 | head-tail adaptor | connector | 1 | 21545 | 21865 |
| AFV51077.1 | JX564242_p48 | holin | phrog_263 | holin | lysis | 1 | 29757 | 30044 |
| AFV51041.1 | JX564242_p12 | integrase | singleton | unknown function | unknown function | -1 | 5874 | 6224 |
| AFV51036.1 | JX564242_p7 | single-stranded binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 3106 | 3564 |
| AFV51060.1 | JX564242_p31 | hypothetical protein | phrog_2538 | terminase small subunit | head and packaging | 1 | 14567 | 14965 |
| AFV51034.1 | JX564242_p5 | hypothetical protein | phrog_4729 | unknown function | unknown function | 1 | 1951 | 2346 |
| AFV51045.1 | JX564242_p16 | hypothetical protein | phrog_5609 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 7894 | 9588 |
| AFV51035.1 | JX564242_p6 | double-strand break repair protein | phrog_1097 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 2355 | 3113 |
| AFV51049.1 | JX564242_p20 | hypothetical protein | phrog_4314 | unknown function | unknown function | 1 | 10736 | 10915 |
| AFV51039.1 | JX564242_p10 | holliday juntion endonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 5238 | 5627 |
| AFV51032.1 | JX564242_p3 | antirepressor-like protein | phrog_373 | anti-repressor | transcription regulation | 1 | 869 | 1609 |
| AFV51056.1 | JX564242_p27 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 13181 | 13423 |
| AFV51033.1 | JX564242_p4 | hypothetical protein | phrog_5450 | unknown function | unknown function | 1 | 1621 | 1836 |
| AFV51061.1 | JX564242_p32 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 14955 | 16196 |
| AFV51074.1 | JX564242_p45 | tail structural protein | phrog_538 | minor tail protein | tail | 1 | 27365 | 28480 |
| AFV51066.1 | JX564242_p37 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 19945 | 20841 |
| AFV51063.1 | JX564242_p34 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 17626 | 18621 |
| AFV51078.1 | JX564242_p49 | lysin | phrog_998 | endolysin | lysis | 1 | 30044 | 30823 |
| AFV51075.1 | JX564242_p46 | tail structural protein | phrog_1220 | head protein | head and packaging | 1 | 28477 | 29505 |
| AFV51031.1 | JX564242_p2 | hypothetical protein | phrog_16628 | unknown function | unknown function | 1 | 641 | 859 |
| AFV51037.1 | JX564242_p8 | replication protein | phrog_5708 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 3734 | 4516 |
| AFV51057.1 | JX564242_p28 | hypothetical protein | phrog_2670 | unknown function | unknown function | 1 | 13420 | 13614 |
| AFV51079.1 | JX564242_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30937 | 31101 |
| AFV51038.1 | JX564242_p9 | topoisomerase | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 4516 | 5241 |
| AFV51048.1 | JX564242_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10591 | 10701 |
| AFV51051.1 | JX564242_p22 | hypothetical protein | phrog_8486 | unknown function | unknown function | 1 | 11484 | 11756 |
| AFV51050.1 | JX564242_p21 | hypothetical protein | phrog_4149 | unknown function | unknown function | 1 | 10905 | 11474 |
| AFV51044.1 | JX564242_p15 | antirepressor | phrog_2657 | transcriptional regulator | transcription regulation | 1 | 7140 | 7814 |
| AFV51042.1 | JX564242_p13 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 6286 | 6585 |
| AFV51071.1 | JX564242_p42 | major tail protein | phrog_885 | major tail protein | tail | 1 | 22660 | 23508 |
| AFV51069.1 | JX564242_p40 | activator of tail terminator | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21870 | 22289 |
| AFV51058.1 | JX564242_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13761 | 13949 |
| AFV51055.1 | JX564242_p26 | hypothetical protein | phrog_6072 | unknown function | unknown function | 1 | 12889 | 13134 |
| AFV51067.1 | JX564242_p38 | hypothetical protein | phrog_1236 | head protein | head and packaging | 1 | 20977 | 21543 |
| AFV51073.1 | JX564242_p44 | tail structural protein | phrog_33 | distal tail protein Dit | tail | 1 | 26491 | 27363 |
| AFV51054.1 | JX564242_p25 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 12378 | 12800 |
| AFV51064.1 | JX564242_p35 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 19067 | 19669 |
| AFV51040.1 | JX564242_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5630 | 5773 |
| AFV51059.1 | JX564242_p30 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 13946 | 14404 |
| AFV51030.1 | JX564242_p1 | cro-like protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 390 | 614 |
| AFV51053.1 | JX564242_p24 | hypothetical protein | phrog_10155 | unknown function | unknown function | 1 | 12016 | 12381 |
| AFV51065.1 | JX564242_p36 | hypothetical protein | phrog_13508 | unknown function | unknown function | 1 | 19681 | 19929 |
| AFV51043.1 | JX564242_p14 | cro protein | phrog_11187 | transcriptional regulator | transcription regulation | 1 | 6730 | 6921 |
| AFV51047.1 | JX564242_p18 | hypothetical protein | phrog_5080 | unknown function | unknown function | 1 | 10376 | 10582 |