| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC139515 |
Definition |
Salmonella phage FSL SP-124, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus; Salmonella virus FSLSP088. |
DB of origin |
PVOG |
Length |
59245 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
56.53 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGF88018.1 | KC139515_p34 | hypothetical protein | phrog_1026 | Rz-like spanin | lysis | -1 | 17635 | 17832 |
| AGF87997.1 | KC139515_p13 | hypothetical protein | phrog_7734 | unknown function | unknown function | 1 | 6754 | 7089 |
| AGF88021.1 | KC139515_p37 | hypothetical protein | phrog_7226 | unknown function | unknown function | -1 | 19005 | 21134 |
| AGF88037.1 | KC139515_p53 | hypothetical protein | phrog_4858 | unknown function | unknown function | -1 | 40401 | 40766 |
| AGF88047.1 | KC139515_p63 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50032 | 50319 |
| AGF88034.1 | KC139515_p50 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | -1 | 38122 | 39261 |
| AGF88046.1 | KC139515_p62 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 48510 | 49985 |
| AGF87999.1 | KC139515_p15 | exonuclease RdgC | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 7398 | 8471 |
| AGF88017.1 | KC139515_p33 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | -1 | 17505 | 17687 |
| AGF87996.1 | KC139515_p12 | hypothetical protein | phrog_7942 | unknown function | unknown function | 1 | 6327 | 6767 |
| AGF88003.1 | KC139515_p19 | hypothetical protein | phrog_8641 | unknown function | unknown function | 1 | 9920 | 10576 |
| AGF87993.1 | KC139515_p9 | hypothetical protein | phrog_3199 | unknown function | unknown function | -1 | 4310 | 4849 |
| AGF88023.1 | KC139515_p39 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 23421 | 24383 |
| AGF87992.1 | KC139515_p8 | hypothetical protein | phrog_10759 | unknown function | unknown function | -1 | 3610 | 4092 |
| AGF88032.1 | KC139515_p48 | pre-tape measure frameshift protein G-T | phrog_9221 | tail length tape measure protein | tail | -1 | 37322 | 37519 |
| AGF88039.1 | KC139515_p55 | capsid protein E | phrog_29 | major head protein | head and packaging | -1 | 41124 | 42188 |
| AGF88027.1 | KC139515_p43 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | -1 | 30031 | 30270 |
| AGF88020.1 | KC139515_p36 | lysis protein B | phrog_7686 | Rz-like spanin | lysis | -1 | 18603 | 18941 |
| AGF88008.1 | KC139515_p24 | hypothetical protein | phrog_8705 | unknown function | unknown function | 1 | 13172 | 13393 |
| AGF87990.1 | KC139515_p6 | hypothetical protein | phrog_8635 | unknown function | unknown function | -1 | 2829 | 3050 |
| AGF88013.1 | KC139515_p29 | hypothetical protein | phrog_8098 | unknown function | unknown function | 1 | 15016 | 15720 |
| AGF88004.1 | KC139515_p20 | hypothetical protein | phrog_8386 | unknown function | unknown function | 1 | 10573 | 11673 |
| AGF88050.1 | KC139515_p66 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 53078 | 54415 |
| AGF88044.1 | KC139515_p60 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | -1 | 45889 | 47964 |
| AGF88007.1 | KC139515_p23 | hypothetical protein | phrog_9067 | unknown function | unknown function | 1 | 12981 | 13175 |
| AGF88030.1 | KC139515_p46 | hypothetical protein | phrog_1082 | tail assembly protein | tail | -1 | 31340 | 33028 |
| AGF88019.1 | KC139515_p35 | lysis protein A | phrog_873 | endolysin | head and packaging | -1 | 17886 | 18599 |
| AGF87987.1 | KC139515_p3 | hypothetical protein | phrog_8059 | unknown function | unknown function | -1 | 1041 | 1247 |
| AGF87998.1 | KC139515_p14 | hypothetical protein | phrog_7965 | unknown function | unknown function | 1 | 7076 | 7417 |
| AGF88025.1 | KC139515_p41 | tail fiber protein | phrog_7049 | tail fiber protein | tail | -1 | 25411 | 26151 |
| AGF88001.1 | KC139515_p17 | hypothetical protein | phrog_7587 | unknown function | unknown function | 1 | 8712 | 8987 |
| AGF88026.1 | KC139515_p42 | hypothetical protein | phrog_6284 | tail protein | tail | -1 | 26151 | 30041 |
| AGF88012.1 | KC139515_p28 | hypothetical protein | phrog_8264 | unknown function | unknown function | 1 | 14562 | 15014 |
| AGF88053.1 | KC139515_p69 | hypothetical protein | phrog_7401 | unknown function | unknown function | 1 | 55449 | 55730 |
| AGF88009.1 | KC139515_p25 | hypothetical protein | phrog_9072 | thymidylate synthase complementing protein | DNA, RNA and nucleotide metabolism | 1 | 13383 | 13895 |
| AGF88048.1 | KC139515_p64 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50321 | 52360 |
| AGF88028.1 | KC139515_p44 | tail assembly protein | phrog_1180 | tail assembly chaperone | tail | -1 | 30270 | 30500 |
| AGF87995.1 | KC139515_p11 | hypothetical protein | phrog_6647 | unknown function | unknown function | 1 | 5884 | 6255 |
| AGF88052.1 | KC139515_p68 | hypothetical protein | phrog_7721 | unknown function | unknown function | -1 | 54800 | 55210 |
| AGF88031.1 | KC139515_p47 | tape measure protein | phrog_2335 | tail length tape measure protein | tail | -1 | 33034 | 37329 |
| AGF88041.1 | KC139515_p57 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | -1 | 42635 | 43906 |
| AGF88029.1 | KC139515_p45 | structural phage protein | phrog_778 | tail assembly protein | tail | -1 | 30512 | 31330 |
| AGF87985.1 | KC139515_p1 | hypothetical protein | phrog_8116 | unknown function | unknown function | -1 | 553 | 804 |
| AGF88055.1 | KC139515_p71 | helix-turn-helix XRE-family of transcriptional regulators | phrog_18318 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 58357 | 58683 |
| AGF88024.1 | KC139515_p40 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 24394 | 25401 |
| AGF87994.1 | KC139515_p10 | hypothetical protein | phrog_4445 | unknown function | unknown function | -1 | 4863 | 5123 |
| AGF88010.1 | KC139515_p26 | hypothetical protein | phrog_3012 | unknown function | unknown function | 1 | 13976 | 14257 |
| AGF87988.1 | KC139515_p4 | hypothetical protein | phrog_3786 | unknown function | unknown function | -1 | 1250 | 1522 |
| AGF88036.1 | KC139515_p52 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | -1 | 39775 | 40401 |
| AGF88002.1 | KC139515_p18 | hypothetical protein | phrog_6886 | unknown function | unknown function | 1 | 9177 | 9923 |
| AGF88045.1 | KC139515_p61 | TerS | phrog_141 | terminase small subunit | head and packaging | -1 | 47954 | 48523 |
| AGF88038.1 | KC139515_p54 | hypothetical protein | phrog_7559 | unknown function | unknown function | -1 | 40769 | 41062 |
| AGF87991.1 | KC139515_p7 | hypothetical protein | phrog_9514 | unknown function | unknown function | -1 | 3047 | 3595 |
| AGF88040.1 | KC139515_p56 | decorator protein D | phrog_49 | head decoration | head and packaging | -1 | 42201 | 42605 |
| AGF87989.1 | KC139515_p5 | hypothetical protein | phrog_10087 | unknown function | unknown function | -1 | 1534 | 2703 |
| AGF88011.1 | KC139515_p27 | hypothetical protein | phrog_9301 | unknown function | unknown function | 1 | 14254 | 14565 |
| AGF88049.1 | KC139515_p65 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 52427 | 53023 |
| AGF88051.1 | KC139515_p67 | hypothetical protein | phrog_8318 | unknown function | unknown function | -1 | 54408 | 54737 |
| AGF87986.1 | KC139515_p2 | hypothetical protein | phrog_7646 | unknown function | unknown function | -1 | 797 | 1048 |
| AGF88015.1 | KC139515_p31 | NinC protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 16132 | 17046 |
| AGF88000.1 | KC139515_p16 | hypothetical protein | phrog_7200 | unknown function | unknown function | 1 | 8474 | 8707 |
| AGF88042.1 | KC139515_p58 | portal protein | phrog_21 | portal protein | head and packaging | -1 | 43948 | 45627 |
| AGF88054.1 | KC139515_p70 | DR0530-like primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 55727 | 58309 |
| AGF88016.1 | KC139515_p32 | nucleoside 2-deoxyribosyltransferase | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 17043 | 17504 |
| AGF88035.1 | KC139515_p51 | hypothetical protein | phrog_5078 | tail terminator | connector | -1 | 39275 | 39778 |
| AGF88014.1 | KC139515_p30 | hypothetical protein | phrog_25081 | unknown function | unknown function | 1 | 15885 | 16112 |
| AGF88033.1 | KC139515_p49 | pre-tape measure frameshift protein G-T | phrog_5260 | tail protein | tail | -1 | 37564 | 38025 |
| AGF88006.1 | KC139515_p22 | hypothetical protein | phrog_8209 | unknown function | unknown function | 1 | 12437 | 12970 |
| AGF88022.1 | KC139515_p38 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 22388 | 23407 |
| AGF88043.1 | KC139515_p59 | head-tail joining protein lambda W | phrog_75 | head-tail adaptor Ad1 | connector | -1 | 45624 | 45878 |
| AGF88005.1 | KC139515_p21 | DNA adenine methylase | phrog_111 | DNA methyltransferase | other | 1 | 11673 | 12359 |