Genomic map of Lactococcus phage fd13 (KC182545)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC182545
Definition
Lactococcus phage fd13, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
30674
Host Name
Lactococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
34.71
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGI10811.1 KC182545_p21 holin phrog_1379 unknown function unknown function 1 17475 17828
AGI10804.1 KC182545_p14 hypothetical protein phrog_1420 virion structural protein head and packaging 1 10551 10826
AGI10837.1 KC182545_p47 hypothetical protein phrog_7549 unknown function unknown function -1 27288 27512
AGI10840.1 KC182545_p50 hypothetical protein phrog_5027 unknown function unknown function 1 28775 29002
AGI10801.1 KC182545_p11 hypothetical protein phrog_1440 virion structural protein head and packaging 1 7193 7558
AGI10813.1 KC182545_p23 hypothetical protein phrog_3775 transglycosylase other -1 18836 18997
AGI10799.1 KC182545_p9 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6377 6874
AGI10843.1 KC182545_p53 hypothetical protein phrog_1652 unknown function unknown function 1 29614 29781
AGI10838.1 KC182545_p48 hypothetical protein singleton unknown function unknown function 1 28294 28404
AGI10831.1 KC182545_p41 hypothetical protein phrog_1449 unknown function unknown function -1 24726 25133
AGI10827.1 KC182545_p37 hypothetical protein phrog_1295 unknown function unknown function -1 23271 23486
AGI10807.1 KC182545_p17 hypothetical protein phrog_1424 tail protein tail 1 14348 15244
AGI10834.1 KC182545_p44 hypothetical protein phrog_3604 unknown function unknown function -1 25905 26087
AGI10833.1 KC182545_p43 hypothetical protein phrog_1405 unknown function unknown function -1 25676 25942
AGI10814.1 KC182545_p24 hypothetical protein phrog_1430 unknown function unknown function -1 19059 19325
AGI10793.1 KC182545_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2658 2942
AGI10821.1 KC182545_p31 hypothetical protein phrog_1225 unknown function unknown function -1 20758 21063
AGI10817.1 KC182545_p27 hypothetical protein phrog_1441 unknown function unknown function -1 19845 20078
AGI10819.1 KC182545_p29 hypothetical protein phrog_2530 unknown function unknown function -1 20190 20396
AGI10795.1 KC182545_p5 head protease phrog_80 head maturation protease head and packaging 1 4072 4608
AGI10800.1 KC182545_p10 hypothetical protein phrog_1484 virion structural protein head and packaging 1 6864 7202
AGI10824.1 KC182545_p34 hypothetical protein phrog_56 DNA methyltransferase other -1 21573 22442
AGI10803.1 KC182545_p13 hypothetical protein phrog_1433 major tail protein tail 1 9591 10496
AGI10829.1 KC182545_p39 sak protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 23865 24419
AGI10835.1 KC182545_p45 DNA polymerase subunit phrog_1284 unknown function unknown function -1 26080 27030
AGI10809.1 KC182545_p19 hypothetical protein phrog_1434 unknown function unknown function 1 16361 16669
AGI10794.1 KC182545_p4 portal protein phrog_12 portal protein head and packaging 1 2955 4091
AGI10798.1 KC182545_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 6063 6380
AGI10805.1 KC182545_p15 hypothetical protein phrog_1421 virion structural protein head and packaging 1 10846 11358
AGI10808.1 KC182545_p18 hypothetical protein phrog_1432 tail associated lysin tail 1 15244 16386
AGI10816.1 KC182545_p26 hypothetical protein phrog_1415 unknown function unknown function -1 19498 19845
AGI10791.1 KC182545_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 263 787
AGI10796.1 KC182545_p6 hypothetical protein phrog_1393 minor head protein head and packaging 1 4601 5782
AGI10810.1 KC182545_p20 receptor binding protein phrog_1630 receptor binding tail protein tail 1 16659 17453
AGI10820.1 KC182545_p30 hypothetical protein phrog_1509 unknown function unknown function -1 20423 20674
AGI10841.1 KC182545_p51 hypothetical protein phrog_1436 unknown function unknown function 1 29007 29138
AGI10815.1 KC182545_p25 hypothetical protein phrog_3389 unknown function unknown function -1 19322 19501
AGI10832.1 KC182545_p42 hypothetical protein phrog_2228 unknown function unknown function -1 25238 25618
AGI10792.1 KC182545_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 1007 2668
AGI10806.1 KC182545_p16 tail tape measure protein phrog_58 tail length tape measure protein tail 1 11358 14348
AGI10830.1 KC182545_p40 HNH endonuclease phrog_5462 unknown function unknown function -1 24416 24739
AGI10836.1 KC182545_p46 hypothetical protein phrog_2541 unknown function unknown function -1 27023 27244
AGI10823.1 KC182545_p33 hypothetical protein phrog_1083 unknown function unknown function -1 21194 21550
AGI10818.1 KC182545_p28 hypothetical protein phrog_1820 unknown function unknown function -1 20012 20188
AGI10825.1 KC182545_p35 hypothetical protein phrog_1825 DNA methyltransferase other -1 22435 22686
AGI10839.1 KC182545_p49 hypothetical protein phrog_1656 unknown function unknown function -1 28556 28744
AGI10828.1 KC182545_p38 hypothetical protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23502 23861
AGI10822.1 KC182545_p32 hypothetical protein phrog_1508 unknown function unknown function -1 21064 21183
AGI10802.1 KC182545_p12 hypothetical protein phrog_2370 neck passage structure connector 1 7615 9567
AGI10826.1 KC182545_p36 hypothetical protein phrog_1317 unknown function unknown function -1 22765 23274
AGI10797.1 KC182545_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5803 6066
AGI10812.1 KC182545_p22 endolysin phrog_670 endolysin lysis 1 17825 18565
AGI10842.1 KC182545_p52 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29135 29617