| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC182545 |
Definition |
Lactococcus phage fd13, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
30674 |
Host Name |
Lactococcus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.71 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGI10811.1 | KC182545_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 17475 | 17828 |
| AGI10804.1 | KC182545_p14 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10551 | 10826 |
| AGI10837.1 | KC182545_p47 | hypothetical protein | phrog_7549 | unknown function | unknown function | -1 | 27288 | 27512 |
| AGI10840.1 | KC182545_p50 | hypothetical protein | phrog_5027 | unknown function | unknown function | 1 | 28775 | 29002 |
| AGI10801.1 | KC182545_p11 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 7193 | 7558 |
| AGI10813.1 | KC182545_p23 | hypothetical protein | phrog_3775 | transglycosylase | other | -1 | 18836 | 18997 |
| AGI10799.1 | KC182545_p9 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6377 | 6874 |
| AGI10843.1 | KC182545_p53 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 29614 | 29781 |
| AGI10838.1 | KC182545_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28294 | 28404 |
| AGI10831.1 | KC182545_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24726 | 25133 |
| AGI10827.1 | KC182545_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23271 | 23486 |
| AGI10807.1 | KC182545_p17 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14348 | 15244 |
| AGI10834.1 | KC182545_p44 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25905 | 26087 |
| AGI10833.1 | KC182545_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25676 | 25942 |
| AGI10814.1 | KC182545_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19059 | 19325 |
| AGI10793.1 | KC182545_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2658 | 2942 |
| AGI10821.1 | KC182545_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20758 | 21063 |
| AGI10817.1 | KC182545_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19845 | 20078 |
| AGI10819.1 | KC182545_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20190 | 20396 |
| AGI10795.1 | KC182545_p5 | head protease | phrog_80 | head maturation protease | head and packaging | 1 | 4072 | 4608 |
| AGI10800.1 | KC182545_p10 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6864 | 7202 |
| AGI10824.1 | KC182545_p34 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 21573 | 22442 |
| AGI10803.1 | KC182545_p13 | hypothetical protein | phrog_1433 | major tail protein | tail | 1 | 9591 | 10496 |
| AGI10829.1 | KC182545_p39 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23865 | 24419 |
| AGI10835.1 | KC182545_p45 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 26080 | 27030 |
| AGI10809.1 | KC182545_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16361 | 16669 |
| AGI10794.1 | KC182545_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2955 | 4091 |
| AGI10798.1 | KC182545_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6063 | 6380 |
| AGI10805.1 | KC182545_p15 | hypothetical protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10846 | 11358 |
| AGI10808.1 | KC182545_p18 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15244 | 16386 |
| AGI10816.1 | KC182545_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19498 | 19845 |
| AGI10791.1 | KC182545_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 263 | 787 |
| AGI10796.1 | KC182545_p6 | hypothetical protein | phrog_1393 | minor head protein | head and packaging | 1 | 4601 | 5782 |
| AGI10810.1 | KC182545_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16659 | 17453 |
| AGI10820.1 | KC182545_p30 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 20423 | 20674 |
| AGI10841.1 | KC182545_p51 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 29007 | 29138 |
| AGI10815.1 | KC182545_p25 | hypothetical protein | phrog_3389 | unknown function | unknown function | -1 | 19322 | 19501 |
| AGI10832.1 | KC182545_p42 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 25238 | 25618 |
| AGI10792.1 | KC182545_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1007 | 2668 |
| AGI10806.1 | KC182545_p16 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11358 | 14348 |
| AGI10830.1 | KC182545_p40 | HNH endonuclease | phrog_5462 | unknown function | unknown function | -1 | 24416 | 24739 |
| AGI10836.1 | KC182545_p46 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 27023 | 27244 |
| AGI10823.1 | KC182545_p33 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 21194 | 21550 |
| AGI10818.1 | KC182545_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20012 | 20188 |
| AGI10825.1 | KC182545_p35 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22435 | 22686 |
| AGI10839.1 | KC182545_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28556 | 28744 |
| AGI10828.1 | KC182545_p38 | hypothetical protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23502 | 23861 |
| AGI10822.1 | KC182545_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21064 | 21183 |
| AGI10802.1 | KC182545_p12 | hypothetical protein | phrog_2370 | neck passage structure | connector | 1 | 7615 | 9567 |
| AGI10826.1 | KC182545_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 22765 | 23274 |
| AGI10797.1 | KC182545_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5803 | 6066 |
| AGI10812.1 | KC182545_p22 | endolysin | phrog_670 | endolysin | lysis | 1 | 17825 | 18565 |
| AGI10842.1 | KC182545_p52 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29135 | 29617 |