| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC333879 |
Definition |
Enterobacteria phage phiJLA23, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Rogunavirinae; Rogunavirus; Escherichia virus phiJLA23. |
DB of origin |
PVOG |
Length |
43017 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
44.18 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGC35342.1 | KC333879_p12 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 12007 | 12393 |
| AGC35346.1 | KC333879_p16 | hypothetical protein | phrog_2716 | unknown function | unknown function | -1 | 13627 | 13872 |
| AGC35381.1 | KC333879_p51 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 31485 | 31610 |
| AGC35393.1 | KC333879_p63 | exodeoxyribonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 40426 | 41394 |
| AGC35353.1 | KC333879_p23 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 19670 | 21238 |
| AGC35365.1 | KC333879_p35 | hypothetical protein | phrog_4448 | unknown function | unknown function | 1 | 25238 | 25477 |
| AGC35370.1 | KC333879_p40 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 26752 | 28341 |
| AGC35350.1 | KC333879_p20 | hypothetical protein | phrog_530 | head maturation protease | head and packaging | -1 | 16396 | 17505 |
| AGC35369.1 | KC333879_p39 | hypothetical protein | phrog_8121 | unknown function | unknown function | 1 | 26538 | 26717 |
| AGC35335.1 | KC333879_p5 | hypothetical protein | phrog_30 | minor tail protein | tail | -1 | 5607 | 6353 |
| AGC35375.1 | KC333879_p45 | hypothetical protein | phrog_4788 | unknown function | unknown function | -1 | 29891 | 30064 |
| AGC35345.1 | KC333879_p15 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 13181 | 13582 |
| AGC35337.1 | KC333879_p7 | minor tail protein | phrog_14 | minor tail protein | tail | -1 | 7167 | 7517 |
| AGC35363.1 | KC333879_p33 | hypothetical protein | phrog_7327 | unknown function | unknown function | -1 | 24414 | 24974 |
| AGC35394.1 | KC333879_p64 | hypothetical protein | phrog_5247 | unknown function | unknown function | -1 | 41398 | 41592 |
| AGC35367.1 | KC333879_p37 | hypothetical protein | phrog_2684 | unknown function | unknown function | 1 | 25703 | 26062 |
| AGC35364.1 | KC333879_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24974 | 25048 |
| AGC35351.1 | KC333879_p21 | head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | -1 | 17495 | 18238 |
| AGC35390.1 | KC333879_p60 | tail fiber | phrog_4818 | tail fiber protein | tail | 1 | 36503 | 39220 |
| AGC35339.1 | KC333879_p9 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | -1 | 10637 | 10891 |
| AGC35334.1 | KC333879_p4 | tail assembly protein | phrog_32 | tail assembly protein | tail | -1 | 5060 | 5626 |
| AGC35359.1 | KC333879_p29 | hypothetical protein | phrog_11452 | unknown function | unknown function | -1 | 22970 | 23263 |
| AGC35391.1 | KC333879_p61 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 39252 | 39680 |
| AGC35336.1 | KC333879_p6 | hypothetical protein | phrog_18 | minor tail protein | tail | -1 | 6363 | 7127 |
| AGC35366.1 | KC333879_p36 | hypothetical protein | phrog_4548 | unknown function | unknown function | 1 | 25478 | 25630 |
| AGC35379.1 | KC333879_p49 | hypothetical protein | phrog_4596 | unknown function | unknown function | -1 | 30995 | 31252 |
| AGC35358.1 | KC333879_p28 | hypothetical protein | phrog_3955 | unknown function | unknown function | -1 | 22832 | 22966 |
| AGC35388.1 | KC333879_p58 | transcriptional regulator | phrog_2856 | transcriptional regulator | transcription regulation | 1 | 34975 | 35448 |
| AGC35352.1 | KC333879_p22 | portal protein | phrog_146 | portal protein | head and packaging | -1 | 18219 | 19493 |
| AGC35348.1 | KC333879_p18 | DNA polymerase I | phrog_22681 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 15326 | 15823 |
| AGC35380.1 | KC333879_p50 | hypothetical protein | phrog_2817 | unknown function | unknown function | -1 | 31249 | 31488 |
| AGC35383.1 | KC333879_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31948 | 32049 |
| AGC35382.1 | KC333879_p52 | minor capsid protein | singleton | unknown function | unknown function | -1 | 31685 | 31936 |
| AGC35376.1 | KC333879_p46 | hypothetical protein | phrog_10052 | unknown function | unknown function | -1 | 30077 | 30265 |
| AGC35389.1 | KC333879_p59 | alpha replication protein | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 35501 | 36424 |
| AGC35392.1 | KC333879_p62 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 39722 | 40369 |
| AGC35332.1 | KC333879_p2 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 600 | 1562 |
| AGC35373.1 | KC333879_p43 | phage-related lysozyme | phrog_7 | endolysin | lysis | -1 | 29169 | 29564 |
| AGC35395.1 | KC333879_p65 | hypothetical protein | phrog_8235 | anti-repressor | transcription regulation | -1 | 41666 | 42079 |
| AGC35349.1 | KC333879_p19 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 15917 | 16384 |
| AGC35374.1 | KC333879_p44 | holin | phrog_2877 | holin | lysis | -1 | 29561 | 29776 |
| AGC35384.1 | KC333879_p54 | hypothetical protein | phrog_2676 | unknown function | unknown function | -1 | 32079 | 32297 |
| AGC35338.1 | KC333879_p8 | tail length tape measure protein precursor | phrog_24 | tail length tape measure protein | tail | -1 | 7549 | 10602 |
| AGC35360.1 | KC333879_p30 | hypothetical protein | phrog_1312 | unknown function | unknown function | -1 | 23260 | 23388 |
| AGC35377.1 | KC333879_p47 | hypothetical protein | phrog_7411 | unknown function | unknown function | -1 | 30265 | 30450 |
| AGC35362.1 | KC333879_p32 | hypothetical protein | phrog_13316 | unknown function | unknown function | -1 | 24126 | 24356 |
| AGC35385.1 | KC333879_p55 | hypothetical protein | phrog_6031 | unknown function | unknown function | -1 | 32297 | 32491 |
| AGC35343.1 | KC333879_p13 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 12395 | 12823 |
| AGC35331.1 | KC333879_p1 | hypothetical protein | phrog_4281 | unknown function | unknown function | 1 | 280 | 600 |
| AGC35344.1 | KC333879_p14 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 12816 | 13184 |
| AGC35333.1 | KC333879_p3 | tail fiber | phrog_31 | central tail fiber J | tail | -1 | 1593 | 5018 |
| AGC35368.1 | KC333879_p38 | hypothetical protein | phrog_11986 | unknown function | unknown function | 1 | 26273 | 26455 |
| AGC35347.1 | KC333879_p17 | hypothetical protein | phrog_264 | major head protein | head and packaging | -1 | 13965 | 14924 |
| AGC35340.1 | KC333879_p10 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 10954 | 11268 |
| AGC35371.1 | KC333879_p41 | hypothetical protein | phrog_2794 | unknown function | unknown function | 1 | 28346 | 28681 |
| AGC35356.1 | KC333879_p26 | hypothetical protein | phrog_10885 | unknown function | unknown function | -1 | 22403 | 22597 |
| AGC35386.1 | KC333879_p56 | helicase-related protein | phrog_824 | unknown function | unknown function | -1 | 32550 | 32939 |
| AGC35355.1 | KC333879_p25 | hypothetical protein | phrog_2919 | unknown function | unknown function | -1 | 21850 | 21999 |
| AGC35361.1 | KC333879_p31 | hypothetical protein | phrog_8335 | unknown function | unknown function | -1 | 23842 | 24075 |
| AGC35372.1 | KC333879_p42 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | -1 | 28695 | 29099 |
| AGC35357.1 | KC333879_p27 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 22590 | 22829 |
| AGC35341.1 | KC333879_p11 | hypothetical protein | phrog_584 | major tail protein | tail | -1 | 11342 | 11992 |
| AGC35354.1 | KC333879_p24 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | -1 | 21235 | 21750 |
| AGC35387.1 | KC333879_p57 | helicase-related protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 32939 | 34933 |
| AGC35378.1 | KC333879_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30511 | 30843 |