| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC348598 |
Definition |
Streptococcus phage phi20c, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
33516 |
Host Name |
Streptococcus suis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
41.71 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGF87315.1 | KC348598_p25 | hypothetical protein | phrog_2862 | unknown function | unknown function | -1 | 18476 | 18838 |
| AGF87332.1 | KC348598_p42 | HNH endonuclease | phrog_1891 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 27342 | 27938 |
| AGF87302.1 | KC348598_p12 | major tail protein | phrog_117 | major tail protein | tail | -1 | 10199 | 10786 |
| AGF87324.1 | KC348598_p34 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23173 | 23571 |
| AGF87342.1 | KC348598_p52 | hypothetical protein | phrog_10787 | unknown function | unknown function | 1 | 31134 | 31562 |
| AGF87303.1 | KC348598_p13 | hypothetical protein | phrog_123 | tail terminator | connector | -1 | 10802 | 11137 |
| AGF87293.1 | KC348598_p3 | phage holin protein | phrog_608 | holin | lysis | -1 | 1356 | 1706 |
| AGF87294.1 | KC348598_p4 | hypothetical protein | phrog_1625 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | -1 | 1709 | 2008 |
| AGF87322.1 | KC348598_p32 | virulence-associated protein E | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 20963 | 22345 |
| AGF87295.1 | KC348598_p5 | hypothetical protein | phrog_1164 | unknown function | unknown function | -1 | 2012 | 2356 |
| AGF87296.1 | KC348598_p6 | hypothetical protein | phrog_1137 | unknown function | unknown function | -1 | 2359 | 2577 |
| AGF87313.1 | KC348598_p23 | hypothetical protein | phrog_2494 | minor head protein | head and packaging | -1 | 16001 | 17221 |
| AGF87309.1 | KC348598_p19 | hypothetical protein | phrog_233 | head scaffolding protein | head and packaging | -1 | 13204 | 13665 |
| AGF87343.1 | KC348598_p53 | hypothetical protein | phrog_6701 | unknown function | unknown function | 1 | 31555 | 32163 |
| AGF87317.1 | KC348598_p27 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 19371 | 19805 |
| AGF87338.1 | KC348598_p48 | hypothetical protein | phrog_30904 | unknown function | unknown function | -1 | 29569 | 29973 |
| AGF87334.1 | KC348598_p44 | hypothetical protein | phrog_12597 | unknown function | unknown function | -1 | 28159 | 28389 |
| AGF87314.1 | KC348598_p24 | phage portal protein | phrog_104 | portal protein | head and packaging | -1 | 17214 | 18479 |
| AGF87325.1 | KC348598_p35 | hypothetical protein | phrog_23177 | unknown function | unknown function | -1 | 23568 | 23864 |
| AGF87331.1 | KC348598_p41 | Gp157-like protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | -1 | 26879 | 27358 |
| AGF87335.1 | KC348598_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28382 | 28666 |
| AGF87307.1 | KC348598_p17 | hypothetical protein | phrog_1539 | Arc-like repressor | transcription regulation | -1 | 12090 | 12308 |
| AGF87323.1 | KC348598_p33 | bifunctional DNA primase/polymerase | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | -1 | 22335 | 23162 |
| AGF87304.1 | KC348598_p14 | hypothetical protein | phrog_387 | neck protein | connector | -1 | 11134 | 11373 |
| AGF87311.1 | KC348598_p21 | hypothetical protein | phrog_903 | unknown function | unknown function | -1 | 15463 | 15735 |
| AGF87321.1 | KC348598_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20637 | 20765 |
| AGF87310.1 | KC348598_p20 | phage terminase | phrog_9 | terminase large subunit | head and packaging | -1 | 13749 | 15164 |
| AGF87308.1 | KC348598_p18 | phage capsid protein | phrog_10 | major head protein | head and packaging | -1 | 12310 | 13200 |
| AGF87291.1 | KC348598_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33504 | 33516 |
| AGF87291.1 | KC348598_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1 | 86 |
| AGF87344.1 | KC348598_p54 | integrase protein | phrog_1 | integrase | integration and excision | 1 | 32283 | 33425 |
| AGF87328.1 | KC348598_p38 | type III restriction enzyme, res subunit | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 24915 | 26087 |
| AGF87337.1 | KC348598_p47 | hypothetical protein | phrog_633 | transcriptional regulator | transcription regulation | -1 | 28996 | 29340 |
| AGF87336.1 | KC348598_p46 | excisionase | phrog_904 | excisionase | integration and excision | -1 | 28668 | 28979 |
| AGF87299.1 | KC348598_p9 | phage tail protein | phrog_58 | tail length tape measure protein | tail | -1 | 6958 | 9540 |
| AGF87318.1 | KC348598_p28 | hypothetical protein | phrog_4455 | unknown function | unknown function | -1 | 19878 | 20126 |
| AGF87301.1 | KC348598_p11 | hypothetical protein | phrog_1526 | unknown function | unknown function | -1 | 9910 | 10188 |
| AGF87333.1 | KC348598_p43 | hypothetical protein | phrog_2044 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | -1 | 27942 | 28166 |
| AGF87300.1 | KC348598_p10 | hypothetical protein | phrog_1633 | unknown function | unknown function | -1 | 9530 | 9913 |
| AGF87312.1 | KC348598_p22 | hypothetical protein | phrog_36787 | unknown function | unknown function | -1 | 15763 | 15996 |
| AGF87298.1 | KC348598_p8 | phage tail protein | phrog_33 | distal tail protein Dit | tail | -1 | 6263 | 6958 |
| AGF87330.1 | KC348598_p40 | hypothetical protein | phrog_1341 | unknown function | unknown function | -1 | 26520 | 26882 |
| AGF87316.1 | KC348598_p26 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18927 | 19274 |
| AGF87306.1 | KC348598_p16 | phage protein Gp19-like protein | phrog_137 | head-tail adaptor Ad1 | connector | -1 | 11691 | 12086 |
| AGF87297.1 | KC348598_p7 | gp58-like protein | phrog_1330 | tail protein | tail | -1 | 2586 | 6281 |
| AGF87339.1 | KC348598_p49 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 29989 | 30189 |
| AGF87292.1 | KC348598_p2 | phage lysin | phrog_1309 | endolysin | lysis | -1 | 653 | 1372 |
| AGF87340.1 | KC348598_p50 | transcriptional regulator | singleton | unknown function | unknown function | 1 | 30240 | 30758 |
| AGF87320.1 | KC348598_p30 | hypothetical protein | phrog_1489 | unknown function | unknown function | -1 | 20435 | 20590 |
| AGF87326.1 | KC348598_p36 | Erf family protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23864 | 24562 |
| AGF87341.1 | KC348598_p51 | cI-like repressor | phrog_87 | metallo-protease | other | 1 | 30745 | 31122 |
| AGF87319.1 | KC348598_p29 | hypothetical protein | phrog_884 | unknown function | unknown function | -1 | 20130 | 20438 |
| AGF87305.1 | KC348598_p15 | hypothetical protein | phrog_501 | head closure Hc1 | connector | -1 | 11366 | 11704 |
| AGF87327.1 | KC348598_p37 | hypothetical protein | phrog_2486 | unknown function | unknown function | -1 | 24572 | 24892 |
| AGF87329.1 | KC348598_p39 | hypothetical protein | phrog_1981 | unknown function | unknown function | -1 | 26056 | 26520 |