Genomic map of Streptococcus phage phi30c (KC348599)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC348599
Definition
Streptococcus phage phi30c, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
42703
Host Name
Streptococcus suis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
40.59
Number of singletons
7
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGF87356.1 KC348599_p12 holin phrog_608 holin lysis -1 6357 6707
AGF87369.1 KC348599_p25 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 20211 20525
AGF87394.1 KC348599_p50 hypothetical protein phrog_12597 unknown function unknown function -1 34307 34501
AGF87374.1 KC348599_p30 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover -1 24180 24347
AGF87368.1 KC348599_p24 phage head-tail joining protein phrog_25 head closure Hc1 connector -1 19856 20224
AGF87398.1 KC348599_p54 hypothetical protein phrog_32289 unknown function unknown function 1 35427 35573
AGF87359.1 KC348599_p15 hypothetical protein phrog_1137 unknown function unknown function -1 7398 7607
AGF87371.1 KC348599_p27 Clp protease phrog_94 head maturation protease head and packaging -1 21872 22558
AGF87382.1 KC348599_p38 hypothetical protein singleton unknown function unknown function -1 28688 28855
AGF87362.1 KC348599_p18 phage-related minor tail protein phrog_1293 tail length tape measure protein tail -1 13739 17884
AGF87348.1 KC348599_p4 hypothetical protein singleton unknown function unknown function 1 1916 2137
AGF87386.1 KC348599_p42 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 29647 30096
AGF87354.1 KC348599_p10 hypothetical protein phrog_876 transcriptional repressor transcription regulation -1 5283 5555
AGF87376.1 KC348599_p32 hypothetical protein singleton unknown function unknown function -1 26108 26320
AGF87400.1 KC348599_p56 hypothetical protein phrog_25340 unknown function unknown function 1 35969 36187
AGF87360.1 KC348599_p16 gp58-like protein phrog_1330 tail protein tail -1 7616 13018
AGF87404.1 KC348599_p60 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 36991 37176
AGF87355.1 KC348599_p11 lysin phrog_1309 endolysin lysis -1 5654 6373
AGF87365.1 KC348599_p21 phage major tail protein phrog_88 major tail protein tail -1 18481 19041
AGF87375.1 KC348599_p31 phage terminase large subunit phrog_9 terminase large subunit head and packaging -1 24348 26069
AGF87407.1 KC348599_p63 peptidase S24-like protein phrog_4 transcriptional repressor transcription regulation 1 37810 38580
AGF87401.1 KC348599_p57 hypothetical protein singleton unknown function unknown function -1 36184 36321
AGF87364.1 KC348599_p20 hypothetical protein phrog_187 head-tail adaptor connector -1 18097 18426
AGF87346.1 KC348599_p2 hypothetical protein singleton unknown function unknown function 1 1327 1470
AGF87384.1 KC348599_p40 hypothetical protein phrog_1689 nucleotide kinase other -1 29052 29342
AGF87350.1 KC348599_p6 malate dehydrogenase singleton unknown function unknown function 1 2521 2988
AGF87387.1 KC348599_p43 hypothetical protein phrog_1341 unknown function unknown function -1 30093 30560
AGF87379.1 KC348599_p35 ArpU family phage encoded transcriptional regulator phrog_248 transcriptional activator transcription regulation -1 27526 27948
AGF87395.1 KC348599_p51 hypothetical protein phrog_12118 unknown function unknown function -1 34482 34739
AGF87403.1 KC348599_p59 hypothetical protein phrog_3873 unknown function unknown function 1 36609 36860
AGF87352.1 KC348599_p8 phage antirepressor phrog_130 anti-repressor Ant transcription regulation -1 4186 4935
AGF87353.1 KC348599_p9 hypothetical protein phrog_13592 unknown function unknown function -1 4937 5167
AGF87357.1 KC348599_p13 hypothetical protein phrog_18008 unknown function unknown function -1 6718 7053
AGF87383.1 KC348599_p39 hypothetical protein phrog_8042 unknown function unknown function -1 28855 29052
AGF87410.1 KC348599_p66 phage integrase phrog_1 integrase integration and excision 1 40435 41508
AGF87405.1 KC348599_p61 hypothetical protein phrog_6930 unknown function unknown function 1 37274 37486
AGF87349.1 KC348599_p5 response regulator receiver protein singleton unknown function unknown function 1 2218 2493
AGF87378.1 KC348599_p34 HNH endonuclease phrog_589 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26802 27125
AGF87408.1 KC348599_p64 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 38629 39435
AGF87389.1 KC348599_p45 recombinational DNA repair protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31375 32202
AGF87370.1 KC348599_p26 phage capsid protein phrog_10 major head protein head and packaging -1 20665 21903
AGF87406.1 KC348599_p62 hypothetical protein phrog_9031 unknown function unknown function -1 37475 37624
AGF87396.1 KC348599_p52 excisionase protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 34736 35038
AGF87399.1 KC348599_p55 hypothetical protein phrog_17445 unknown function unknown function -1 35736 35900
AGF87380.1 KC348599_p36 hypothetical protein phrog_4779 transcriptional regulator transcription regulation -1 28023 28283
AGF87411.1 KC348599_p67 SNARE associated golgi family protein phrog_15996 unknown function unknown function 1 42109 42702
AGF87347.1 KC348599_p3 hypothetical protein phrog_876 transcriptional repressor transcription regulation 1 1537 1761
AGF87367.1 KC348599_p23 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 19485 19859
AGF87351.1 KC348599_p7 hypothetical protein phrog_3446 unknown function unknown function -1 3355 3870
AGF87391.1 KC348599_p47 hypothetical protein phrog_2108 unknown function unknown function -1 32348 32509
AGF87373.1 KC348599_p29 hypothetical protein phrog_903 unknown function unknown function -1 23921 24166
AGF87358.1 KC348599_p14 hypothetical protein phrog_1164 unknown function unknown function -1 7057 7395
AGF87393.1 KC348599_p49 replication initiator protein A phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism -1 33358 34167
AGF87377.1 KC348599_p33 phage terminase small subunit phrog_83 terminase small subunit head and packaging -1 26322 26789
AGF87366.1 KC348599_p22 hypothetical protein phrog_78 tail terminator connector -1 19060 19488
AGF87402.1 KC348599_p58 hypothetical protein phrog_16280 unknown function unknown function -1 36336 36620
AGF87388.1 KC348599_p44 PDDEXK-like PF12684 domain protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism -1 30573 31406
AGF87361.1 KC348599_p17 phage tail protein phrog_33 distal tail protein Dit tail -1 13019 13738
AGF87372.1 KC348599_p28 phage portal protein phrog_12 portal protein head and packaging -1 22524 23729
AGF87385.1 KC348599_p41 hypothetical protein phrog_884 unknown function unknown function -1 29342 29650
AGF87392.1 KC348599_p48 IstB-like ATP binding protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism -1 32518 33345
AGF87381.1 KC348599_p37 hypothetical protein phrog_26928 unknown function unknown function -1 28284 28511
AGF87397.1 KC348599_p53 DNA-binding helix-turn-helix protein phrog_3 transcriptional repressor transcription regulation -1 35119 35337
AGF87363.1 KC348599_p19 hypothetical protein phrog_6190 unknown function unknown function -1 17897 18052
AGF87390.1 KC348599_p46 hypothetical protein phrog_17539 unknown function unknown function -1 32220 32348
AGF87409.1 KC348599_p65 PemK-like protein phrog_1412 antitoxin mazE-like moron, auxiliary metabolic gene and host takeover 1 39516 40163
AGF87345.1 KC348599_p1 hypothetical protein phrog_2277 unknown function unknown function 1 1017 1226