Genomic map of Streptococcus phage phiD12 (KC348603)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC348603
Definition
Streptococcus phage phiD12, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
49973
Host Name
Streptococcus suis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
40.82
Number of singletons
9
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGF87596.1 KC348603_p2 cation efflux family protein phrog_7308 cation efflux protein moron, auxiliary metabolic gene and host takeover 1 1205 2104
AGF87595.1 KC348603_p1 endonuclease phrog_19169 endonuclease DNA, RNA and nucleotide metabolism 1 86 913
AGF87610.1 KC348603_p16 hypothetical protein phrog_36445 unknown function unknown function -1 13493 14047
AGF87644.1 KC348603_p50 S-adenosylmethionine synthetase phrog_1569 unknown function unknown function -1 43593 44630
AGF87640.1 KC348603_p46 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other -1 39106 40386
AGF87620.1 KC348603_p26 hypothetical protein phrog_1164 unknown function unknown function -1 21338 21706
AGF87605.1 KC348603_p11 thymidylate kinase phrog_761 thymidylate kinase other -1 8609 9247
AGF87635.1 KC348603_p41 phage terminase large subunit phrog_9 terminase large subunit head and packaging -1 36226 37818
AGF87616.1 KC348603_p22 recombinase phrog_95 integrase integration and excision -1 17928 19031
AGF87602.1 KC348603_p8 tetrapyrrole (corrin/porphyrin) methylase singleton unknown function unknown function -1 6526 7389
AGF87634.1 KC348603_p40 hypothetical protein phrog_1987 unknown function unknown function -1 35787 36164
AGF87607.1 KC348603_p13 toxic anion resistance protein singleton unknown function unknown function -1 10325 11596
AGF87637.1 KC348603_p43 hypothetical protein phrog_4709 unknown function unknown function -1 38339 38569
AGF87636.1 KC348603_p42 phage terminase small subunit phrog_83 terminase small subunit head and packaging -1 37815 38252
AGF87625.1 KC348603_p31 hypothetical protein phrog_709 unknown function unknown function -1 30240 30659
AGF87630.1 KC348603_p36 phage gp6-like head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 32274 32534
AGF87627.1 KC348603_p33 hypothetical protein phrog_78 tail terminator connector -1 31242 31568
AGF87641.1 KC348603_p47 ParB-like nuclease phrog_498 DNA methyltransferase other -1 40383 42476
AGF87617.1 KC348603_p23 hypothetical protein phrog_2996 unknown function unknown function -1 19221 19382
AGF87612.1 KC348603_p18 hypothetical protein phrog_18012 unknown function unknown function -1 14608 14940
AGF87629.1 KC348603_p35 phage head-tail joining protein phrog_25 head closure Hc1 connector -1 31936 32274
AGF87604.1 KC348603_p10 DNA polymerase III singleton unknown function unknown function -1 7728 8612
AGF87632.1 KC348603_p38 Clp protease phrog_94 head maturation protease head and packaging -1 33758 34453
AGF87638.1 KC348603_p44 hypothetical protein phrog_3782 unknown function unknown function -1 38571 38783
AGF87642.1 KC348603_p48 hypothetical protein phrog_2308 unknown function unknown function -1 42466 42927
AGF87643.1 KC348603_p49 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism -1 43226 43591
AGF87614.1 KC348603_p20 transposase phrog_2199 transposase integration and excision 1 15708 16745
AGF87631.1 KC348603_p37 phage capsid family phrog_10 major head protein head and packaging -1 32534 33739
AGF87633.1 KC348603_p39 phage portal protein phrog_12 portal protein head and packaging -1 34446 35729
AGF87626.1 KC348603_p32 hypothetical protein phrog_88 major tail protein tail -1 30671 31252
AGF87619.1 KC348603_p25 holin phrog_199 holin lysis -1 20965 21360
AGF87613.1 KC348603_p19 transposase phrog_36562 transposase integration and excision 1 15492 15692
AGF87628.1 KC348603_p34 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 31575 31943
AGF87646.1 KC348603_p52 hypothetical protein phrog_36 transcriptional regulator transcription regulation -1 45056 45559
AGF87639.1 KC348603_p45 hypothetical protein phrog_6231 unknown function unknown function -1 38785 39066
AGF87622.1 KC348603_p28 gp58-like protein phrog_1330 tail protein tail -1 21931 26478
AGF87600.1 KC348603_p6 acetyltransferase phrog_36270 acetyltransferase other -1 4522 5079
AGF87647.1 KC348603_p53 SNF2 family protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 45552 46928
AGF87618.1 KC348603_p24 lysin phrog_2742 endolysin lysis -1 19489 20958
AGF87597.1 KC348603_p3 ArsC family protein phrog_16693 unknown function unknown function -1 2121 2474
AGF87601.1 KC348603_p7 aminotransferase class-V singleton unknown function unknown function -1 5079 6170
AGF87624.1 KC348603_p30 myosin tail phrog_58 tail length tape measure protein tail -1 27199 30057
AGF87606.1 KC348603_p12 YitT family protein phrog_34276 unknown function unknown function 1 9416 10288
AGF87609.1 KC348603_p15 CBS family protein singleton unknown function unknown function -1 12523 13179
AGF87623.1 KC348603_p29 hypothetical protein phrog_33 distal tail protein Dit tail -1 26480 27202
AGF87598.1 KC348603_p4 6-O-methylguanine DNA methyltransferase phrog_34906 DNA methyltransferase other -1 2458 2964
AGF87608.1 KC348603_p14 5-bromo-4-chloroindolyl phosphate hydrolysis protein singleton unknown function unknown function -1 11602 12429
AGF87621.1 KC348603_p27 hypothetical protein phrog_1137 unknown function unknown function -1 21712 21918
AGF87603.1 KC348603_p9 hypothetical protein singleton unknown function unknown function -1 7391 7708
AGF87645.1 KC348603_p51 hypothetical protein phrog_2555 unknown function unknown function -1 44675 44890
AGF87611.1 KC348603_p17 hypothetical protein singleton unknown function unknown function -1 14291 14506
AGF87599.1 KC348603_p5 D-isomer specific 2-hydroxyacid dehydrogenase singleton unknown function unknown function -1 2967 4148
AGF87615.1 KC348603_p21 recombinase phrog_95 integrase integration and excision -1 16843 17928
AGF87649.1 KC348603_p55 D5-like protein phrog_1883 DNA helicase DNA, RNA and nucleotide metabolism -1 47537 49819
AGF87648.1 KC348603_p54 VRR-NUC family protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 46909 47190