| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC348603 |
Definition |
Streptococcus phage phiD12, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
49973 |
Host Name |
Streptococcus suis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
40.82 |
Number of singletons |
9 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGF87596.1 | KC348603_p2 | cation efflux family protein | phrog_7308 | cation efflux protein | moron, auxiliary metabolic gene and host takeover | 1 | 1205 | 2104 |
| AGF87595.1 | KC348603_p1 | endonuclease | phrog_19169 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 86 | 913 |
| AGF87610.1 | KC348603_p16 | hypothetical protein | phrog_36445 | unknown function | unknown function | -1 | 13493 | 14047 |
| AGF87644.1 | KC348603_p50 | S-adenosylmethionine synthetase | phrog_1569 | unknown function | unknown function | -1 | 43593 | 44630 |
| AGF87640.1 | KC348603_p46 | C-5 cytosine-specific DNA methylase | phrog_116 | DNA methyltransferase | other | -1 | 39106 | 40386 |
| AGF87620.1 | KC348603_p26 | hypothetical protein | phrog_1164 | unknown function | unknown function | -1 | 21338 | 21706 |
| AGF87605.1 | KC348603_p11 | thymidylate kinase | phrog_761 | thymidylate kinase | other | -1 | 8609 | 9247 |
| AGF87635.1 | KC348603_p41 | phage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | -1 | 36226 | 37818 |
| AGF87616.1 | KC348603_p22 | recombinase | phrog_95 | integrase | integration and excision | -1 | 17928 | 19031 |
| AGF87602.1 | KC348603_p8 | tetrapyrrole (corrin/porphyrin) methylase | singleton | unknown function | unknown function | -1 | 6526 | 7389 |
| AGF87634.1 | KC348603_p40 | hypothetical protein | phrog_1987 | unknown function | unknown function | -1 | 35787 | 36164 |
| AGF87607.1 | KC348603_p13 | toxic anion resistance protein | singleton | unknown function | unknown function | -1 | 10325 | 11596 |
| AGF87637.1 | KC348603_p43 | hypothetical protein | phrog_4709 | unknown function | unknown function | -1 | 38339 | 38569 |
| AGF87636.1 | KC348603_p42 | phage terminase small subunit | phrog_83 | terminase small subunit | head and packaging | -1 | 37815 | 38252 |
| AGF87625.1 | KC348603_p31 | hypothetical protein | phrog_709 | unknown function | unknown function | -1 | 30240 | 30659 |
| AGF87630.1 | KC348603_p36 | phage gp6-like head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | -1 | 32274 | 32534 |
| AGF87627.1 | KC348603_p33 | hypothetical protein | phrog_78 | tail terminator | connector | -1 | 31242 | 31568 |
| AGF87641.1 | KC348603_p47 | ParB-like nuclease | phrog_498 | DNA methyltransferase | other | -1 | 40383 | 42476 |
| AGF87617.1 | KC348603_p23 | hypothetical protein | phrog_2996 | unknown function | unknown function | -1 | 19221 | 19382 |
| AGF87612.1 | KC348603_p18 | hypothetical protein | phrog_18012 | unknown function | unknown function | -1 | 14608 | 14940 |
| AGF87629.1 | KC348603_p35 | phage head-tail joining protein | phrog_25 | head closure Hc1 | connector | -1 | 31936 | 32274 |
| AGF87604.1 | KC348603_p10 | DNA polymerase III | singleton | unknown function | unknown function | -1 | 7728 | 8612 |
| AGF87632.1 | KC348603_p38 | Clp protease | phrog_94 | head maturation protease | head and packaging | -1 | 33758 | 34453 |
| AGF87638.1 | KC348603_p44 | hypothetical protein | phrog_3782 | unknown function | unknown function | -1 | 38571 | 38783 |
| AGF87642.1 | KC348603_p48 | hypothetical protein | phrog_2308 | unknown function | unknown function | -1 | 42466 | 42927 |
| AGF87643.1 | KC348603_p49 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 43226 | 43591 |
| AGF87614.1 | KC348603_p20 | transposase | phrog_2199 | transposase | integration and excision | 1 | 15708 | 16745 |
| AGF87631.1 | KC348603_p37 | phage capsid family | phrog_10 | major head protein | head and packaging | -1 | 32534 | 33739 |
| AGF87633.1 | KC348603_p39 | phage portal protein | phrog_12 | portal protein | head and packaging | -1 | 34446 | 35729 |
| AGF87626.1 | KC348603_p32 | hypothetical protein | phrog_88 | major tail protein | tail | -1 | 30671 | 31252 |
| AGF87619.1 | KC348603_p25 | holin | phrog_199 | holin | lysis | -1 | 20965 | 21360 |
| AGF87613.1 | KC348603_p19 | transposase | phrog_36562 | transposase | integration and excision | 1 | 15492 | 15692 |
| AGF87628.1 | KC348603_p34 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 31575 | 31943 |
| AGF87646.1 | KC348603_p52 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | -1 | 45056 | 45559 |
| AGF87639.1 | KC348603_p45 | hypothetical protein | phrog_6231 | unknown function | unknown function | -1 | 38785 | 39066 |
| AGF87622.1 | KC348603_p28 | gp58-like protein | phrog_1330 | tail protein | tail | -1 | 21931 | 26478 |
| AGF87600.1 | KC348603_p6 | acetyltransferase | phrog_36270 | acetyltransferase | other | -1 | 4522 | 5079 |
| AGF87647.1 | KC348603_p53 | SNF2 family protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 45552 | 46928 |
| AGF87618.1 | KC348603_p24 | lysin | phrog_2742 | endolysin | lysis | -1 | 19489 | 20958 |
| AGF87597.1 | KC348603_p3 | ArsC family protein | phrog_16693 | unknown function | unknown function | -1 | 2121 | 2474 |
| AGF87601.1 | KC348603_p7 | aminotransferase class-V | singleton | unknown function | unknown function | -1 | 5079 | 6170 |
| AGF87624.1 | KC348603_p30 | myosin tail | phrog_58 | tail length tape measure protein | tail | -1 | 27199 | 30057 |
| AGF87606.1 | KC348603_p12 | YitT family protein | phrog_34276 | unknown function | unknown function | 1 | 9416 | 10288 |
| AGF87609.1 | KC348603_p15 | CBS family protein | singleton | unknown function | unknown function | -1 | 12523 | 13179 |
| AGF87623.1 | KC348603_p29 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | -1 | 26480 | 27202 |
| AGF87598.1 | KC348603_p4 | 6-O-methylguanine DNA methyltransferase | phrog_34906 | DNA methyltransferase | other | -1 | 2458 | 2964 |
| AGF87608.1 | KC348603_p14 | 5-bromo-4-chloroindolyl phosphate hydrolysis protein | singleton | unknown function | unknown function | -1 | 11602 | 12429 |
| AGF87621.1 | KC348603_p27 | hypothetical protein | phrog_1137 | unknown function | unknown function | -1 | 21712 | 21918 |
| AGF87603.1 | KC348603_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7391 | 7708 |
| AGF87645.1 | KC348603_p51 | hypothetical protein | phrog_2555 | unknown function | unknown function | -1 | 44675 | 44890 |
| AGF87611.1 | KC348603_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14291 | 14506 |
| AGF87599.1 | KC348603_p5 | D-isomer specific 2-hydroxyacid dehydrogenase | singleton | unknown function | unknown function | -1 | 2967 | 4148 |
| AGF87615.1 | KC348603_p21 | recombinase | phrog_95 | integrase | integration and excision | -1 | 16843 | 17928 |
| AGF87649.1 | KC348603_p55 | D5-like protein | phrog_1883 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 47537 | 49819 |
| AGF87648.1 | KC348603_p54 | VRR-NUC family protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46909 | 47190 |