Genomic map of Streptococcus phage phiST1 (KC413988)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC413988
Definition
Streptococcus phage phiST1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
38940
Host Name
Streptococcus suis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
39.94
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGE61211.1 KC413988_p6 collagen triple helix repeat protein phrog_588 tail fiber protein and host specificity tail -1 3882 8324
AGE61234.1 KC413988_p29 endodeoxyribonuclease phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 24922 25338
AGE61258.1 KC413988_p53 hypothetical protein phrog_87 metallo-protease other 1 36580 36963
AGE61209.1 KC413988_p4 hypothetical protein phrog_2566 unknown function unknown function -1 1487 1771
AGE61227.1 KC413988_p22 phage terminase large subunit phrog_2 terminase large subunit head and packaging -1 21022 22347
AGE61253.1 KC413988_p48 DNA-binding phage protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 34688 34966
AGE61229.1 KC413988_p24 hypothetical protein phrog_9479 unknown function unknown function -1 23020 23403
AGE61221.1 KC413988_p16 hypothetical protein phrog_2910 unknown function unknown function -1 16157 16411
AGE61250.1 KC413988_p45 hypothetical protein phrog_7964 unknown function unknown function -1 32738 33700
AGE61255.1 KC413988_p50 hypothetical protein phrog_847 anti-repressor Ant transcription regulation -1 35209 35712
AGE61228.1 KC413988_p23 phage terminase small subunit phrog_51 terminase small subunit head and packaging -1 22337 22828
AGE61247.1 KC413988_p42 MazG nucleotide pyrophosphohydrolase phrog_1992 MazG-like pyrophosphatase other -1 30483 31016
AGE61210.1 KC413988_p5 hypothetical protein phrog_372 tail protein tail -1 1815 3869
AGE61208.1 KC413988_p3 hypothetical protein phrog_4257 unknown function unknown function -1 1019 1474
AGE61216.1 KC413988_p11 hypothetical protein phrog_820 major tail protein tail -1 14183 14641
AGE61245.1 KC413988_p40 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 29784 30317
AGE61237.1 KC413988_p32 hypothetical protein phrog_884 unknown function unknown function -1 25789 26091
AGE61217.1 KC413988_p12 minor capsid protein phrog_913 minor head protein head and packaging -1 14645 15052
AGE61232.1 KC413988_p27 hypothetical protein phrog_29344 unknown function unknown function -1 24521 24757
AGE61252.1 KC413988_p47 DNA-binding helix-turn-helix protein phrog_1456 DNA binding protein DNA, RNA and nucleotide metabolism -1 34328 34645
AGE61256.1 KC413988_p51 phage antirepressor phrog_1337 DNA binding protein DNA, RNA and nucleotide metabolism -1 35720 35911
AGE61240.1 KC413988_p35 hypothetical protein phrog_17605 unknown function unknown function -1 27138 27542
AGE61233.1 KC413988_p28 hypothetical protein phrog_35322 unknown function unknown function -1 24750 24935
AGE61249.1 KC413988_p44 ERF superfamily protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 32042 32734
AGE61219.1 KC413988_p14 minor capsid protein phrog_793 head-tail adaptor connector -1 15402 15728
AGE61214.1 KC413988_p9 hypothetical protein phrog_706 unknown function unknown function -1 13205 13792
AGE61241.1 KC413988_p36 hypothetical protein phrog_1029 unknown function unknown function -1 27563 28300
AGE61259.1 KC413988_p54 hypothetical protein singleton unknown function unknown function 1 36973 37770
AGE61223.1 KC413988_p18 phage minor structural protein phrog_194 head scaffolding protein head and packaging -1 17319 17885
AGE61254.1 KC413988_p49 hypothetical protein phrog_8322 unknown function unknown function -1 34959 35114
AGE61242.1 KC413988_p37 hypothetical protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism -1 28302 28736
AGE61215.1 KC413988_p10 hypothetical protein phrog_1061 unknown function unknown function -1 13792 14160
AGE61261.1 KC413988_p56 hypothetical protein singleton unknown function unknown function -1 38725 38886
AGE61236.1 KC413988_p31 hypothetical protein singleton unknown function unknown function -1 25558 25788
AGE61224.1 KC413988_p19 phage minor capsid protein 2 phrog_581 minor head protein head and packaging -1 18032 19183
AGE61239.1 KC413988_p34 hypothetical protein phrog_17645 unknown function unknown function -1 26956 27132
AGE61257.1 KC413988_p52 HTH_19 family protein phrog_8 transcriptional regulator transcription regulation 1 36220 36567
AGE61225.1 KC413988_p20 hypothetical protein phrog_419 unknown function unknown function -1 19186 19437
AGE61244.1 KC413988_p39 hypothetical protein phrog_3947 unknown function unknown function -1 29178 29381
AGE61246.1 KC413988_p41 hypothetical protein phrog_4139 unknown function unknown function -1 30307 30483
AGE61243.1 KC413988_p38 HTH_3 family protein phrog_8 transcriptional regulator transcription regulation -1 28747 29181
AGE61222.1 KC413988_p17 hypothetical protein phrog_840 major head protein head and packaging -1 16422 17300
AGE61218.1 KC413988_p13 minor capsid protein phrog_556 minor head protein head and packaging -1 15052 15402
AGE61231.1 KC413988_p26 hypothetical protein phrog_3511 unknown function unknown function -1 24140 24520
AGE61235.1 KC413988_p30 hypothetical protein phrog_18515 unknown function unknown function -1 25335 25565
AGE61207.1 KC413988_p2 phage holin phrog_881 holin lysis -1 841 1044
AGE61238.1 KC413988_p33 SPFH domain / Band 7 family protein phrog_200 lipoprotein other -1 26092 26943
AGE61251.1 KC413988_p46 hypothetical protein singleton unknown function unknown function -1 34047 34205
AGE61230.1 KC413988_p25 hypothetical protein phrog_8680 unknown function unknown function -1 23400 24071
AGE61220.1 KC413988_p15 hypothetical protein phrog_541 head-tail adaptor connector -1 15718 16113
AGE61213.1 KC413988_p8 membrane protein phrog_1204 tail protein tail -1 9823 13185
AGE61226.1 KC413988_p21 phage portal protein phrog_533 portal protein head and packaging -1 19421 21010
AGE61206.1 KC413988_p1 phage lysin phrog_1309 endolysin lysis -1 1 711
AGE61212.1 KC413988_p7 phage tail protein phrog_202 distal tail protein Dit tail -1 8324 9826
AGE61248.1 KC413988_p43 hypothetical protein phrog_674 unknown function unknown function -1 31016 32038
AGE61260.1 KC413988_p55 phage integrase phrog_1 integrase integration and excision 1 37791 38663