| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC413988 |
Definition |
Streptococcus phage phiST1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
38940 |
Host Name |
Streptococcus suis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
39.94 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGE61211.1 | KC413988_p6 | collagen triple helix repeat protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 3882 | 8324 |
| AGE61234.1 | KC413988_p29 | endodeoxyribonuclease | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 24922 | 25338 |
| AGE61258.1 | KC413988_p53 | hypothetical protein | phrog_87 | metallo-protease | other | 1 | 36580 | 36963 |
| AGE61209.1 | KC413988_p4 | hypothetical protein | phrog_2566 | unknown function | unknown function | -1 | 1487 | 1771 |
| AGE61227.1 | KC413988_p22 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 21022 | 22347 |
| AGE61253.1 | KC413988_p48 | DNA-binding phage protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 34688 | 34966 |
| AGE61229.1 | KC413988_p24 | hypothetical protein | phrog_9479 | unknown function | unknown function | -1 | 23020 | 23403 |
| AGE61221.1 | KC413988_p16 | hypothetical protein | phrog_2910 | unknown function | unknown function | -1 | 16157 | 16411 |
| AGE61250.1 | KC413988_p45 | hypothetical protein | phrog_7964 | unknown function | unknown function | -1 | 32738 | 33700 |
| AGE61255.1 | KC413988_p50 | hypothetical protein | phrog_847 | anti-repressor Ant | transcription regulation | -1 | 35209 | 35712 |
| AGE61228.1 | KC413988_p23 | phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 22337 | 22828 |
| AGE61247.1 | KC413988_p42 | MazG nucleotide pyrophosphohydrolase | phrog_1992 | MazG-like pyrophosphatase | other | -1 | 30483 | 31016 |
| AGE61210.1 | KC413988_p5 | hypothetical protein | phrog_372 | tail protein | tail | -1 | 1815 | 3869 |
| AGE61208.1 | KC413988_p3 | hypothetical protein | phrog_4257 | unknown function | unknown function | -1 | 1019 | 1474 |
| AGE61216.1 | KC413988_p11 | hypothetical protein | phrog_820 | major tail protein | tail | -1 | 14183 | 14641 |
| AGE61245.1 | KC413988_p40 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29784 | 30317 |
| AGE61237.1 | KC413988_p32 | hypothetical protein | phrog_884 | unknown function | unknown function | -1 | 25789 | 26091 |
| AGE61217.1 | KC413988_p12 | minor capsid protein | phrog_913 | minor head protein | head and packaging | -1 | 14645 | 15052 |
| AGE61232.1 | KC413988_p27 | hypothetical protein | phrog_29344 | unknown function | unknown function | -1 | 24521 | 24757 |
| AGE61252.1 | KC413988_p47 | DNA-binding helix-turn-helix protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 34328 | 34645 |
| AGE61256.1 | KC413988_p51 | phage antirepressor | phrog_1337 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 35720 | 35911 |
| AGE61240.1 | KC413988_p35 | hypothetical protein | phrog_17605 | unknown function | unknown function | -1 | 27138 | 27542 |
| AGE61233.1 | KC413988_p28 | hypothetical protein | phrog_35322 | unknown function | unknown function | -1 | 24750 | 24935 |
| AGE61249.1 | KC413988_p44 | ERF superfamily protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 32042 | 32734 |
| AGE61219.1 | KC413988_p14 | minor capsid protein | phrog_793 | head-tail adaptor | connector | -1 | 15402 | 15728 |
| AGE61214.1 | KC413988_p9 | hypothetical protein | phrog_706 | unknown function | unknown function | -1 | 13205 | 13792 |
| AGE61241.1 | KC413988_p36 | hypothetical protein | phrog_1029 | unknown function | unknown function | -1 | 27563 | 28300 |
| AGE61259.1 | KC413988_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36973 | 37770 |
| AGE61223.1 | KC413988_p18 | phage minor structural protein | phrog_194 | head scaffolding protein | head and packaging | -1 | 17319 | 17885 |
| AGE61254.1 | KC413988_p49 | hypothetical protein | phrog_8322 | unknown function | unknown function | -1 | 34959 | 35114 |
| AGE61242.1 | KC413988_p37 | hypothetical protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | -1 | 28302 | 28736 |
| AGE61215.1 | KC413988_p10 | hypothetical protein | phrog_1061 | unknown function | unknown function | -1 | 13792 | 14160 |
| AGE61261.1 | KC413988_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38725 | 38886 |
| AGE61236.1 | KC413988_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25558 | 25788 |
| AGE61224.1 | KC413988_p19 | phage minor capsid protein 2 | phrog_581 | minor head protein | head and packaging | -1 | 18032 | 19183 |
| AGE61239.1 | KC413988_p34 | hypothetical protein | phrog_17645 | unknown function | unknown function | -1 | 26956 | 27132 |
| AGE61257.1 | KC413988_p52 | HTH_19 family protein | phrog_8 | transcriptional regulator | transcription regulation | 1 | 36220 | 36567 |
| AGE61225.1 | KC413988_p20 | hypothetical protein | phrog_419 | unknown function | unknown function | -1 | 19186 | 19437 |
| AGE61244.1 | KC413988_p39 | hypothetical protein | phrog_3947 | unknown function | unknown function | -1 | 29178 | 29381 |
| AGE61246.1 | KC413988_p41 | hypothetical protein | phrog_4139 | unknown function | unknown function | -1 | 30307 | 30483 |
| AGE61243.1 | KC413988_p38 | HTH_3 family protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 28747 | 29181 |
| AGE61222.1 | KC413988_p17 | hypothetical protein | phrog_840 | major head protein | head and packaging | -1 | 16422 | 17300 |
| AGE61218.1 | KC413988_p13 | minor capsid protein | phrog_556 | minor head protein | head and packaging | -1 | 15052 | 15402 |
| AGE61231.1 | KC413988_p26 | hypothetical protein | phrog_3511 | unknown function | unknown function | -1 | 24140 | 24520 |
| AGE61235.1 | KC413988_p30 | hypothetical protein | phrog_18515 | unknown function | unknown function | -1 | 25335 | 25565 |
| AGE61207.1 | KC413988_p2 | phage holin | phrog_881 | holin | lysis | -1 | 841 | 1044 |
| AGE61238.1 | KC413988_p33 | SPFH domain / Band 7 family protein | phrog_200 | lipoprotein | other | -1 | 26092 | 26943 |
| AGE61251.1 | KC413988_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34047 | 34205 |
| AGE61230.1 | KC413988_p25 | hypothetical protein | phrog_8680 | unknown function | unknown function | -1 | 23400 | 24071 |
| AGE61220.1 | KC413988_p15 | hypothetical protein | phrog_541 | head-tail adaptor | connector | -1 | 15718 | 16113 |
| AGE61213.1 | KC413988_p8 | membrane protein | phrog_1204 | tail protein | tail | -1 | 9823 | 13185 |
| AGE61226.1 | KC413988_p21 | phage portal protein | phrog_533 | portal protein | head and packaging | -1 | 19421 | 21010 |
| AGE61206.1 | KC413988_p1 | phage lysin | phrog_1309 | endolysin | lysis | -1 | 1 | 711 |
| AGE61212.1 | KC413988_p7 | phage tail protein | phrog_202 | distal tail protein Dit | tail | -1 | 8324 | 9826 |
| AGE61248.1 | KC413988_p43 | hypothetical protein | phrog_674 | unknown function | unknown function | -1 | 31016 | 32038 |
| AGE61260.1 | KC413988_p55 | phage integrase | phrog_1 | integrase | integration and excision | 1 | 37791 | 38663 |