Genomic map of Vibrio phage VCO139 (KC438283)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC438283
Definition
Vibrio phage VCO139, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
PVOG
Length
68964
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
34.59
Number of singletons
0
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGI61849.1 KC438283_p18 lipoprotein phrog_21339 lipoprotein other 1 10719 11021
AGI61850.1 KC438283_p19 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 11018 11869
AGI61902.1 KC438283_p74 hypothetical protein phrog_21771 unknown function unknown function 1 65192 65317
AGI61841.1 KC438283_p10 hypothetical protein phrog_19932 unknown function unknown function 1 5385 5600
AGI61883.1 KC438283_p54 hypothetical protein phrog_2646 unknown function unknown function -1 47039 47446
AGI61868.1 KC438283_p37 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 22968 24158
AGI61889.1 KC438283_p60 hypothetical protein phrog_21748 unknown function unknown function -1 53128 53439
AGI61862.1 KC438283_p31 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18585 19160
AGI61874.1 KC438283_p43 phosphoribosyl-ATP diphosphatase phrog_671 nucleotide pyrophosphohydrolase other 1 28932 29381
AGI61840.1 KC438283_p9 DNA-directed RNA polymerase RNAP1 phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 4444 5385
AGI61857.1 KC438283_p26 hypothetical protein phrog_18469 unknown function unknown function 1 15641 16096
AGI61856.1 KC438283_p25 hypothetical protein phrog_21935 unknown function unknown function 1 15454 15594
AGI61893.1 KC438283_p65 hypothetical protein phrog_2125 virion structural protein head and packaging -1 59467 60153
AGI61869.1 KC438283_p38 hypothetical protein phrog_16775 unknown function unknown function 1 24160 24609
AGI61906.1 KC438283_p78 hypothetical protein phrog_27835 unknown function unknown function 1 67567 67680
AGI61895.1 KC438283_p67 hypothetical protein phrog_2109 unknown function unknown function -1 62766 63443
AGI61884.1 KC438283_p55 hypothetical protein phrog_2220 unknown function unknown function -1 47456 49564
AGI61898.1 KC438283_p70 hypothetical protein phrog_23035 unknown function unknown function 1 64427 64540
AGI61870.1 KC438283_p39 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 24724 26403
AGI61846.1 KC438283_p15 hypothetical protein phrog_18917 unknown function unknown function 1 9473 9769
AGI61864.1 KC438283_p33 HNH homing endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19688 20074
AGI61844.1 KC438283_p13 hypothetical protein phrog_17135 unknown function unknown function 1 8667 8939
AGI61838.1 KC438283_p7 hypothetical protein phrog_18082 unknown function unknown function 1 3117 3350
AGI61851.1 KC438283_p20 hypothetical protein phrog_19571 unknown function unknown function 1 12065 12223
AGI61900.1 KC438283_p72 hypothetical protein phrog_23512 unknown function unknown function 1 64710 64916
AGI61866.1 KC438283_p35 metallopeptidase domain protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21042 22271
AGK85679.1 KC438283_p53 hypothetical protein phrog_17660 unknown function unknown function -1 45768 47036
AGI61865.1 KC438283_p34 hypothetical protein phrog_1297 ATPase other 1 20254 20985
AGI61845.1 KC438283_p14 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis -1 8925 9449
AGI61858.1 KC438283_p27 PF11753 family protein phrog_236 nucleotide kinase other 1 16093 16386
AGI61886.1 KC438283_p57 hypothetical protein phrog_2130 unknown function unknown function -1 50066 50650
AGI61871.1 KC438283_p40 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 26548 27081
AGI61888.1 KC438283_p59 hypothetical protein phrog_2120 tail length tape measure protein tail -1 52033 53124
AGI61863.1 KC438283_p32 hypothetical protein phrog_16335 ATPase other 1 19241 19561
AGI61854.1 KC438283_p23 hypothetical protein phrog_21764 unknown function unknown function 1 14352 14663
AGI61842.1 KC438283_p11 DNA-directed RNA polymerase RNAP2 phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 5619 6845
AGI61837.1 KC438283_p6 hypothetical protein phrog_21563 unknown function unknown function 1 2815 3003
AGI61835.1 KC438283_p4 hypothetical protein phrog_24771 unknown function unknown function 1 2386 2643
AGI61848.1 KC438283_p17 PF10947 family protein phrog_18330 unknown function unknown function 1 10303 10722
AGI61903.1 KC438283_p75 hypothetical protein phrog_25913 unknown function unknown function 1 66244 66375
AGI61860.1 KC438283_p29 hypothetical protein phrog_19808 unknown function unknown function 1 16585 17226
AGI61833.1 KC438283_p2 hypothetical protein phrog_2978 unknown function unknown function 1 1634 1912
AGI61890.1 KC438283_p61 portal protein phrog_1216 portal protein head and packaging -1 53439 55556
AGI61907.1 KC438283_p79 hypothetical protein phrog_21584 unknown function unknown function -1 67878 68411
AGI61873.1 KC438283_p42 hypothetical protein phrog_1965 unknown function unknown function 1 28274 28882
AGI61847.1 KC438283_p16 hypothetical protein phrog_37301 unknown function unknown function 1 10165 10293
AGI61892.1 KC438283_p63 hypothetical protein phrog_15833 DNA polymerase DNA, RNA and nucleotide metabolism 1 56396 57019
AGK85678.1 KC438283_p45 hypothetical protein phrog_27540 unknown function unknown function 1 30402 30644
AGI61877.1 KC438283_p47 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 31692 33614
AGI61878.1 KC438283_p48 hypothetical protein phrog_14094 unknown function unknown function 1 33618 33905
AGI61901.1 KC438283_p73 hypothetical protein phrog_21733 unknown function unknown function 1 65014 65205
AGI61852.1 KC438283_p21 hypothetical protein phrog_21600 unknown function unknown function 1 12489 12704
AGK85680.1 KC438283_p64 phage minor structural protein phrog_22896 tail protein tail -1 57044 59470
AGI61896.1 KC438283_p68 hypothetical protein phrog_11073 unknown function unknown function 1 63683 63820
AGI61861.1 KC438283_p30 hypothetical protein phrog_6596 unknown function unknown function 1 17287 17742
AGI61904.1 KC438283_p76 hypothetical protein phrog_10915 unknown function unknown function 1 66484 66723
AGI61867.1 KC438283_p36 hypothetical protein phrog_22607 unknown function unknown function 1 22323 22490
AGI61881.1 KC438283_p51 crossover junction endodeoxyribonuclease RusA phrog_21721 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35430 36227
AGI61843.1 KC438283_p12 hypothetical protein phrog_20578 unknown function unknown function 1 7594 7782
AGI61832.1 KC438283_p1 hypothetical protein phrog_289 GTP-binding domain other 1 808 1218
AGI61885.1 KC438283_p56 hypothetical protein phrog_2050 virion structural protein head and packaging -1 49587 50063
AGI61836.1 KC438283_p5 hypothetical protein phrog_26780 unknown function unknown function 1 2640 2828
AGI61891.1 KC438283_p62 hypothetical protein phrog_18138 unknown function unknown function 1 55626 55913
AGI61855.1 KC438283_p24 hypothetical protein phrog_18142 unknown function unknown function 1 14743 15141
AGI61894.1 KC438283_p66 terminase large subunit phrog_38 terminase large subunit head and packaging -1 60161 62773
AGI61876.1 KC438283_p46 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 30963 31598
AGI61872.1 KC438283_p41 hypothetical protein phrog_2573 DNA polymerase DNA, RNA and nucleotide metabolism 1 27200 28198
AGI61897.1 KC438283_p69 hypothetical protein phrog_11073 unknown function unknown function 1 64143 64325
AGI61882.1 KC438283_p52 viron-encapsulated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 36700 45768
AGI61875.1 KC438283_p44 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 29381 30394
AGI61905.1 KC438283_p77 hypothetical protein phrog_10915 unknown function unknown function 1 66714 66935
AGI61839.1 KC438283_p8 hypothetical protein phrog_21216 unknown function unknown function 1 3406 3672
AGI61899.1 KC438283_p71 hypothetical protein phrog_26832 unknown function unknown function 1 64540 64713
AGI61887.1 KC438283_p58 N4-gp56 family major capsid protein phrog_1357 major head protein head and packaging -1 50707 52020
AGI61853.1 KC438283_p22 hypothetical protein phrog_11852 unknown function unknown function 1 13011 13337
AGI61879.1 KC438283_p49 AAA domain protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33909 34646
AGI61859.1 KC438283_p28 hypothetical protein phrog_20360 unknown function unknown function 1 16389 16571
AGI61834.1 KC438283_p3 hypothetical protein phrog_21816 unknown function unknown function 1 1924 2160
AGI61880.1 KC438283_p50 ssDNA binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34708 35430