| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC438283 |
Definition |
Vibrio phage VCO139, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
PVOG |
Length |
68964 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
34.59 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGI61849.1 | KC438283_p18 | lipoprotein | phrog_21339 | lipoprotein | other | 1 | 10719 | 11021 |
| AGI61850.1 | KC438283_p19 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 11018 | 11869 |
| AGI61902.1 | KC438283_p74 | hypothetical protein | phrog_21771 | unknown function | unknown function | 1 | 65192 | 65317 |
| AGI61841.1 | KC438283_p10 | hypothetical protein | phrog_19932 | unknown function | unknown function | 1 | 5385 | 5600 |
| AGI61883.1 | KC438283_p54 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 47039 | 47446 |
| AGI61868.1 | KC438283_p37 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 22968 | 24158 |
| AGI61889.1 | KC438283_p60 | hypothetical protein | phrog_21748 | unknown function | unknown function | -1 | 53128 | 53439 |
| AGI61862.1 | KC438283_p31 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18585 | 19160 |
| AGI61874.1 | KC438283_p43 | phosphoribosyl-ATP diphosphatase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 28932 | 29381 |
| AGI61840.1 | KC438283_p9 | DNA-directed RNA polymerase RNAP1 | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4444 | 5385 |
| AGI61857.1 | KC438283_p26 | hypothetical protein | phrog_18469 | unknown function | unknown function | 1 | 15641 | 16096 |
| AGI61856.1 | KC438283_p25 | hypothetical protein | phrog_21935 | unknown function | unknown function | 1 | 15454 | 15594 |
| AGI61893.1 | KC438283_p65 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 59467 | 60153 |
| AGI61869.1 | KC438283_p38 | hypothetical protein | phrog_16775 | unknown function | unknown function | 1 | 24160 | 24609 |
| AGI61906.1 | KC438283_p78 | hypothetical protein | phrog_27835 | unknown function | unknown function | 1 | 67567 | 67680 |
| AGI61895.1 | KC438283_p67 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 62766 | 63443 |
| AGI61884.1 | KC438283_p55 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 47456 | 49564 |
| AGI61898.1 | KC438283_p70 | hypothetical protein | phrog_23035 | unknown function | unknown function | 1 | 64427 | 64540 |
| AGI61870.1 | KC438283_p39 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24724 | 26403 |
| AGI61846.1 | KC438283_p15 | hypothetical protein | phrog_18917 | unknown function | unknown function | 1 | 9473 | 9769 |
| AGI61864.1 | KC438283_p33 | HNH homing endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19688 | 20074 |
| AGI61844.1 | KC438283_p13 | hypothetical protein | phrog_17135 | unknown function | unknown function | 1 | 8667 | 8939 |
| AGI61838.1 | KC438283_p7 | hypothetical protein | phrog_18082 | unknown function | unknown function | 1 | 3117 | 3350 |
| AGI61851.1 | KC438283_p20 | hypothetical protein | phrog_19571 | unknown function | unknown function | 1 | 12065 | 12223 |
| AGI61900.1 | KC438283_p72 | hypothetical protein | phrog_23512 | unknown function | unknown function | 1 | 64710 | 64916 |
| AGI61866.1 | KC438283_p35 | metallopeptidase domain protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 21042 | 22271 |
| AGK85679.1 | KC438283_p53 | hypothetical protein | phrog_17660 | unknown function | unknown function | -1 | 45768 | 47036 |
| AGI61865.1 | KC438283_p34 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 20254 | 20985 |
| AGI61845.1 | KC438283_p14 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | -1 | 8925 | 9449 |
| AGI61858.1 | KC438283_p27 | PF11753 family protein | phrog_236 | nucleotide kinase | other | 1 | 16093 | 16386 |
| AGI61886.1 | KC438283_p57 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 50066 | 50650 |
| AGI61871.1 | KC438283_p40 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26548 | 27081 |
| AGI61888.1 | KC438283_p59 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 52033 | 53124 |
| AGI61863.1 | KC438283_p32 | hypothetical protein | phrog_16335 | ATPase | other | 1 | 19241 | 19561 |
| AGI61854.1 | KC438283_p23 | hypothetical protein | phrog_21764 | unknown function | unknown function | 1 | 14352 | 14663 |
| AGI61842.1 | KC438283_p11 | DNA-directed RNA polymerase RNAP2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5619 | 6845 |
| AGI61837.1 | KC438283_p6 | hypothetical protein | phrog_21563 | unknown function | unknown function | 1 | 2815 | 3003 |
| AGI61835.1 | KC438283_p4 | hypothetical protein | phrog_24771 | unknown function | unknown function | 1 | 2386 | 2643 |
| AGI61848.1 | KC438283_p17 | PF10947 family protein | phrog_18330 | unknown function | unknown function | 1 | 10303 | 10722 |
| AGI61903.1 | KC438283_p75 | hypothetical protein | phrog_25913 | unknown function | unknown function | 1 | 66244 | 66375 |
| AGI61860.1 | KC438283_p29 | hypothetical protein | phrog_19808 | unknown function | unknown function | 1 | 16585 | 17226 |
| AGI61833.1 | KC438283_p2 | hypothetical protein | phrog_2978 | unknown function | unknown function | 1 | 1634 | 1912 |
| AGI61890.1 | KC438283_p61 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 53439 | 55556 |
| AGI61907.1 | KC438283_p79 | hypothetical protein | phrog_21584 | unknown function | unknown function | -1 | 67878 | 68411 |
| AGI61873.1 | KC438283_p42 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 28274 | 28882 |
| AGI61847.1 | KC438283_p16 | hypothetical protein | phrog_37301 | unknown function | unknown function | 1 | 10165 | 10293 |
| AGI61892.1 | KC438283_p63 | hypothetical protein | phrog_15833 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 56396 | 57019 |
| AGK85678.1 | KC438283_p45 | hypothetical protein | phrog_27540 | unknown function | unknown function | 1 | 30402 | 30644 |
| AGI61877.1 | KC438283_p47 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 31692 | 33614 |
| AGI61878.1 | KC438283_p48 | hypothetical protein | phrog_14094 | unknown function | unknown function | 1 | 33618 | 33905 |
| AGI61901.1 | KC438283_p73 | hypothetical protein | phrog_21733 | unknown function | unknown function | 1 | 65014 | 65205 |
| AGI61852.1 | KC438283_p21 | hypothetical protein | phrog_21600 | unknown function | unknown function | 1 | 12489 | 12704 |
| AGK85680.1 | KC438283_p64 | phage minor structural protein | phrog_22896 | tail protein | tail | -1 | 57044 | 59470 |
| AGI61896.1 | KC438283_p68 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 63683 | 63820 |
| AGI61861.1 | KC438283_p30 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 17287 | 17742 |
| AGI61904.1 | KC438283_p76 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 66484 | 66723 |
| AGI61867.1 | KC438283_p36 | hypothetical protein | phrog_22607 | unknown function | unknown function | 1 | 22323 | 22490 |
| AGI61881.1 | KC438283_p51 | crossover junction endodeoxyribonuclease RusA | phrog_21721 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35430 | 36227 |
| AGI61843.1 | KC438283_p12 | hypothetical protein | phrog_20578 | unknown function | unknown function | 1 | 7594 | 7782 |
| AGI61832.1 | KC438283_p1 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 808 | 1218 |
| AGI61885.1 | KC438283_p56 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 49587 | 50063 |
| AGI61836.1 | KC438283_p5 | hypothetical protein | phrog_26780 | unknown function | unknown function | 1 | 2640 | 2828 |
| AGI61891.1 | KC438283_p62 | hypothetical protein | phrog_18138 | unknown function | unknown function | 1 | 55626 | 55913 |
| AGI61855.1 | KC438283_p24 | hypothetical protein | phrog_18142 | unknown function | unknown function | 1 | 14743 | 15141 |
| AGI61894.1 | KC438283_p66 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 60161 | 62773 |
| AGI61876.1 | KC438283_p46 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30963 | 31598 |
| AGI61872.1 | KC438283_p41 | hypothetical protein | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 27200 | 28198 |
| AGI61897.1 | KC438283_p69 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 64143 | 64325 |
| AGI61882.1 | KC438283_p52 | viron-encapsulated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 36700 | 45768 |
| AGI61875.1 | KC438283_p44 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29381 | 30394 |
| AGI61905.1 | KC438283_p77 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 66714 | 66935 |
| AGI61839.1 | KC438283_p8 | hypothetical protein | phrog_21216 | unknown function | unknown function | 1 | 3406 | 3672 |
| AGI61899.1 | KC438283_p71 | hypothetical protein | phrog_26832 | unknown function | unknown function | 1 | 64540 | 64713 |
| AGI61887.1 | KC438283_p58 | N4-gp56 family major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 50707 | 52020 |
| AGI61853.1 | KC438283_p22 | hypothetical protein | phrog_11852 | unknown function | unknown function | 1 | 13011 | 13337 |
| AGI61879.1 | KC438283_p49 | AAA domain protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33909 | 34646 |
| AGI61859.1 | KC438283_p28 | hypothetical protein | phrog_20360 | unknown function | unknown function | 1 | 16389 | 16571 |
| AGI61834.1 | KC438283_p3 | hypothetical protein | phrog_21816 | unknown function | unknown function | 1 | 1924 | 2160 |
| AGI61880.1 | KC438283_p50 | ssDNA binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34708 | 35430 |