Genomic map of Lactococcus phage CaseusJM1 (KC522412)

functional categories (each PHROG annotation is associated to a category)             Notes   
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG

More about this genome

Lactococcus phage CaseusJM1, complete genome.
Molecule type
Genome structure
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
Host Name
Lactococcus lactis
Host domain
Is prophage?
Number of proteins
Number of singletons
Number of paralogs

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGE60653.1 KC522412_p17 host attachement protein phrog_1432 tail associated lysin tail 1 14284 15411
AGE60645.1 KC522412_p10 structural protein phrog_1440 virion structural protein head and packaging 1 6430 6795
AGE60663.1 KC522412_p27 hypothetical protein phrog_1820 unknown function unknown function -1 18722 18943
AGE60637.1 KC522412_p1 small terminase phrog_1437 terminase small subunit head and packaging 1 242 766
AGE60649.1 KC522412_p13 structural protein phrog_1420 virion structural protein head and packaging 1 9831 10106
AGE60668.1 KC522412_p32 hypothetical protein phrog_1825 DNA methyltransferase other -1 22222 22467
AGE60639.1 KC522412_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2379 2663
AGE60670.1 KC522412_p34 hypothetical protein phrog_1919 unknown function unknown function -1 22612 22914
AGE60674.1 KC522412_p38 ssb protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24156 24515
AGE60664.1 KC522412_p28 single stranded DNA specific exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 18940 20721
AGE60651.1 KC522412_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 10638 13388
AGE60643.1 KC522412_p7 structural protein phrog_1428 head-tail connector protein connector 1 5524 5787
AGE60672.1 KC522412_p36 hypothetical protein phrog_1317 unknown function unknown function -1 23419 23931
AGE60647.1 KC522412_p11 neck passage structure phrog_2370 neck passage structure connector 1 6852 8852
AGE60673.1 KC522412_p37 hypothetical protein phrog_1295 unknown function unknown function -1 23928 24143
AGE60682.1 KC522412_p46 hypothetical protein phrog_7915 unknown function unknown function -1 27840 28538
AGE60644.1 KC522412_p9 structural protein phrog_1484 virion structural protein head and packaging 1 6098 6439
AGE60687.1 KC522412_p51 middle expressed protein 4 phrog_1652 unknown function unknown function 1 29992 30159
AGE60652.1 KC522412_p16 baseplate protein phrog_1424 tail protein tail 1 13388 14284
AGE60656.1 KC522412_p20 holin phrog_1379 unknown function unknown function 1 16500 16853
AGE60638.1 KC522412_p2 large terminase phrog_9 terminase large subunit head and packaging 1 767 2389
AGE60665.1 KC522412_p29 hypothetical protein phrog_1225 unknown function unknown function -1 20844 21152
AGE60684.1 KC522412_p48 middle expressed protein 1 phrog_5027 unknown function unknown function 1 29153 29380
AGE60679.1 KC522412_p43 hypothetical protein phrog_1405 unknown function unknown function -1 26303 26569
AGE60655.1 KC522412_p19 receptor binding protein phrog_1630 receptor binding tail protein tail 1 15684 16478
AGE60667.1 KC522412_p31 hypothetical protein phrog_56 DNA methyltransferase other -1 21330 22229
AGE60648.1 KC522412_p12 major capsid protein phrog_1433 major tail protein tail 1 8875 9780
AGE60658.1 KC522412_p22 hypothetical protein phrog_26701 unknown function unknown function -1 17611 17760
AGE60654.1 KC522412_p18 hypothetical protein phrog_1434 unknown function unknown function 1 15401 15694
AGE60641.1 KC522412_p5 protease phrog_80 head maturation protease head and packaging 1 3793 4329
AGE60659.1 KC522412_p23 unknown early protein phrog_1430 unknown function unknown function -1 17757 18035
AGE60678.1 KC522412_p42 hypothetical protein phrog_2228 unknown function unknown function -1 25860 26246
AGE60662.1 KC522412_p26 hypothetical protein phrog_1441 unknown function unknown function -1 18555 18722
AGE60669.1 KC522412_p33 hypothetical protein phrog_4546 unknown function unknown function -1 22468 22578
AGE60642.1 KC522412_p6 structural protein phrog_1393 minor head protein head and packaging 1 4322 5503
AGE60646.1 KC522412_p8 structural protein phrog_1429 virion structural protein head and packaging 1 5787 6101
AGE60680.1 KC522412_p44 hypothetical protein phrog_3604 unknown function unknown function -1 26532 26714
AGE60660.1 KC522412_p24 unknown early protein phrog_3389 unknown function unknown function -1 18032 18211
AGE60657.1 KC522412_p21 lysin phrog_670 endolysin lysis 1 16850 17554
AGE60677.1 KC522412_p41 hypothetical protein phrog_1449 unknown function unknown function -1 25353 25676
AGE60685.1 KC522412_p49 middle expressed protein 2 phrog_1436 unknown function unknown function 1 29385 29516
AGE60675.1 KC522412_p39 serine kinase (sak) protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24519 25073
AGE60640.1 KC522412_p4 portal protein phrog_12 portal protein head and packaging 1 2676 3812
AGE60676.1 KC522412_p40 HNH endonuclease phrog_5462 unknown function unknown function -1 25070 25366
AGE60683.1 KC522412_p47 hypothetical protein phrog_1656 unknown function unknown function -1 28934 29122
AGE60681.1 KC522412_p45 DNA polymerase phrog_1284 unknown function unknown function -1 26711 27658
AGE60671.1 KC522412_p35 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22911 23336
AGE60661.1 KC522412_p25 hypothetical protein phrog_1415 unknown function unknown function -1 18208 18555
AGE60666.1 KC522412_p30 hypothetical protein phrog_1508 unknown function unknown function -1 21152 21271
AGE60686.1 KC522412_p50 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29513 29995
AGE60650.1 KC522412_p14 structural protein phrog_1421 virion structural protein head and packaging 1 10126 10638