Genomic map of Lactococcus phage CaseusJM1 (KC522412)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC522412
Definition
Lactococcus phage CaseusJM1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
PVOG
Length
30692
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
51
%GC
34.83
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGE60653.1 KC522412_p17 host attachement protein phrog_1432 tail associated lysin tail 1 14284 15411
AGE60645.1 KC522412_p10 structural protein phrog_1440 virion structural protein head and packaging 1 6430 6795
AGE60663.1 KC522412_p27 hypothetical protein phrog_1820 unknown function unknown function -1 18722 18943
AGE60637.1 KC522412_p1 small terminase phrog_1437 terminase small subunit head and packaging 1 242 766
AGE60649.1 KC522412_p13 structural protein phrog_1420 virion structural protein head and packaging 1 9831 10106
AGE60668.1 KC522412_p32 hypothetical protein phrog_1825 DNA methyltransferase other -1 22222 22467
AGE60639.1 KC522412_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2379 2663
AGE60670.1 KC522412_p34 hypothetical protein phrog_1919 unknown function unknown function -1 22612 22914
AGE60674.1 KC522412_p38 ssb protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 24156 24515
AGE60664.1 KC522412_p28 single stranded DNA specific exonuclease phrog_2484 RecJ-like ssDNA exonuclease DNA, RNA and nucleotide metabolism -1 18940 20721
AGE60651.1 KC522412_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 10638 13388
AGE60643.1 KC522412_p7 structural protein phrog_1428 head-tail connector protein connector 1 5524 5787
AGE60672.1 KC522412_p36 hypothetical protein phrog_1317 unknown function unknown function -1 23419 23931
AGE60647.1 KC522412_p11 neck passage structure phrog_2370 neck passage structure connector 1 6852 8852
AGE60673.1 KC522412_p37 hypothetical protein phrog_1295 unknown function unknown function -1 23928 24143
AGE60682.1 KC522412_p46 hypothetical protein phrog_7915 unknown function unknown function -1 27840 28538
AGE60644.1 KC522412_p9 structural protein phrog_1484 virion structural protein head and packaging 1 6098 6439
AGE60687.1 KC522412_p51 middle expressed protein 4 phrog_1652 unknown function unknown function 1 29992 30159
AGE60652.1 KC522412_p16 baseplate protein phrog_1424 tail protein tail 1 13388 14284
AGE60656.1 KC522412_p20 holin phrog_1379 unknown function unknown function 1 16500 16853
AGE60638.1 KC522412_p2 large terminase phrog_9 terminase large subunit head and packaging 1 767 2389
AGE60665.1 KC522412_p29 hypothetical protein phrog_1225 unknown function unknown function -1 20844 21152
AGE60684.1 KC522412_p48 middle expressed protein 1 phrog_5027 unknown function unknown function 1 29153 29380
AGE60679.1 KC522412_p43 hypothetical protein phrog_1405 unknown function unknown function -1 26303 26569
AGE60655.1 KC522412_p19 receptor binding protein phrog_1630 receptor binding tail protein tail 1 15684 16478
AGE60667.1 KC522412_p31 hypothetical protein phrog_56 DNA methyltransferase other -1 21330 22229
AGE60648.1 KC522412_p12 major capsid protein phrog_1433 major tail protein tail 1 8875 9780
AGE60658.1 KC522412_p22 hypothetical protein phrog_26701 unknown function unknown function -1 17611 17760
AGE60654.1 KC522412_p18 hypothetical protein phrog_1434 unknown function unknown function 1 15401 15694
AGE60641.1 KC522412_p5 protease phrog_80 head maturation protease head and packaging 1 3793 4329
AGE60659.1 KC522412_p23 unknown early protein phrog_1430 unknown function unknown function -1 17757 18035
AGE60678.1 KC522412_p42 hypothetical protein phrog_2228 unknown function unknown function -1 25860 26246
AGE60662.1 KC522412_p26 hypothetical protein phrog_1441 unknown function unknown function -1 18555 18722
AGE60669.1 KC522412_p33 hypothetical protein phrog_4546 unknown function unknown function -1 22468 22578
AGE60642.1 KC522412_p6 structural protein phrog_1393 minor head protein head and packaging 1 4322 5503
AGE60646.1 KC522412_p8 structural protein phrog_1429 virion structural protein head and packaging 1 5787 6101
AGE60680.1 KC522412_p44 hypothetical protein phrog_3604 unknown function unknown function -1 26532 26714
AGE60660.1 KC522412_p24 unknown early protein phrog_3389 unknown function unknown function -1 18032 18211
AGE60657.1 KC522412_p21 lysin phrog_670 endolysin lysis 1 16850 17554
AGE60677.1 KC522412_p41 hypothetical protein phrog_1449 unknown function unknown function -1 25353 25676
AGE60685.1 KC522412_p49 middle expressed protein 2 phrog_1436 unknown function unknown function 1 29385 29516
AGE60675.1 KC522412_p39 serine kinase (sak) protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 24519 25073
AGE60640.1 KC522412_p4 portal protein phrog_12 portal protein head and packaging 1 2676 3812
AGE60676.1 KC522412_p40 HNH endonuclease phrog_5462 unknown function unknown function -1 25070 25366
AGE60683.1 KC522412_p47 hypothetical protein phrog_1656 unknown function unknown function -1 28934 29122
AGE60681.1 KC522412_p45 DNA polymerase phrog_1284 unknown function unknown function -1 26711 27658
AGE60671.1 KC522412_p35 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22911 23336
AGE60661.1 KC522412_p25 hypothetical protein phrog_1415 unknown function unknown function -1 18208 18555
AGE60666.1 KC522412_p30 hypothetical protein phrog_1508 unknown function unknown function -1 21152 21271
AGE60686.1 KC522412_p50 holiday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 29513 29995
AGE60650.1 KC522412_p14 structural protein phrog_1421 virion structural protein head and packaging 1 10126 10638