| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC522412 |
Definition |
Lactococcus phage CaseusJM1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
30692 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
51 |
%GC |
34.83 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGE60653.1 | KC522412_p17 | host attachement protein | phrog_1432 | tail associated lysin | tail | 1 | 14284 | 15411 |
| AGE60645.1 | KC522412_p10 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6430 | 6795 |
| AGE60663.1 | KC522412_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 18722 | 18943 |
| AGE60637.1 | KC522412_p1 | small terminase | phrog_1437 | terminase small subunit | head and packaging | 1 | 242 | 766 |
| AGE60649.1 | KC522412_p13 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 9831 | 10106 |
| AGE60668.1 | KC522412_p32 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 22222 | 22467 |
| AGE60639.1 | KC522412_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2379 | 2663 |
| AGE60670.1 | KC522412_p34 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 22612 | 22914 |
| AGE60674.1 | KC522412_p38 | ssb protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24156 | 24515 |
| AGE60664.1 | KC522412_p28 | single stranded DNA specific exonuclease | phrog_2484 | RecJ-like ssDNA exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18940 | 20721 |
| AGE60651.1 | KC522412_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10638 | 13388 |
| AGE60643.1 | KC522412_p7 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5524 | 5787 |
| AGE60672.1 | KC522412_p36 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 23419 | 23931 |
| AGE60647.1 | KC522412_p11 | neck passage structure | phrog_2370 | neck passage structure | connector | 1 | 6852 | 8852 |
| AGE60673.1 | KC522412_p37 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 23928 | 24143 |
| AGE60682.1 | KC522412_p46 | hypothetical protein | phrog_7915 | unknown function | unknown function | -1 | 27840 | 28538 |
| AGE60644.1 | KC522412_p9 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6098 | 6439 |
| AGE60687.1 | KC522412_p51 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 29992 | 30159 |
| AGE60652.1 | KC522412_p16 | baseplate protein | phrog_1424 | tail protein | tail | 1 | 13388 | 14284 |
| AGE60656.1 | KC522412_p20 | holin | phrog_1379 | unknown function | unknown function | 1 | 16500 | 16853 |
| AGE60638.1 | KC522412_p2 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 767 | 2389 |
| AGE60665.1 | KC522412_p29 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 20844 | 21152 |
| AGE60684.1 | KC522412_p48 | middle expressed protein 1 | phrog_5027 | unknown function | unknown function | 1 | 29153 | 29380 |
| AGE60679.1 | KC522412_p43 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 26303 | 26569 |
| AGE60655.1 | KC522412_p19 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 15684 | 16478 |
| AGE60667.1 | KC522412_p31 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 21330 | 22229 |
| AGE60648.1 | KC522412_p12 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 8875 | 9780 |
| AGE60658.1 | KC522412_p22 | hypothetical protein | phrog_26701 | unknown function | unknown function | -1 | 17611 | 17760 |
| AGE60654.1 | KC522412_p18 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 15401 | 15694 |
| AGE60641.1 | KC522412_p5 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 3793 | 4329 |
| AGE60659.1 | KC522412_p23 | unknown early protein | phrog_1430 | unknown function | unknown function | -1 | 17757 | 18035 |
| AGE60678.1 | KC522412_p42 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 25860 | 26246 |
| AGE60662.1 | KC522412_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18555 | 18722 |
| AGE60669.1 | KC522412_p33 | hypothetical protein | phrog_4546 | unknown function | unknown function | -1 | 22468 | 22578 |
| AGE60642.1 | KC522412_p6 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4322 | 5503 |
| AGE60646.1 | KC522412_p8 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5787 | 6101 |
| AGE60680.1 | KC522412_p44 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 26532 | 26714 |
| AGE60660.1 | KC522412_p24 | unknown early protein | phrog_3389 | unknown function | unknown function | -1 | 18032 | 18211 |
| AGE60657.1 | KC522412_p21 | lysin | phrog_670 | endolysin | lysis | 1 | 16850 | 17554 |
| AGE60677.1 | KC522412_p41 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 25353 | 25676 |
| AGE60685.1 | KC522412_p49 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 29385 | 29516 |
| AGE60675.1 | KC522412_p39 | serine kinase (sak) protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 24519 | 25073 |
| AGE60640.1 | KC522412_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2676 | 3812 |
| AGE60676.1 | KC522412_p40 | HNH endonuclease | phrog_5462 | unknown function | unknown function | -1 | 25070 | 25366 |
| AGE60683.1 | KC522412_p47 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 28934 | 29122 |
| AGE60681.1 | KC522412_p45 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 26711 | 27658 |
| AGE60671.1 | KC522412_p35 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22911 | 23336 |
| AGE60661.1 | KC522412_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 18208 | 18555 |
| AGE60666.1 | KC522412_p30 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21152 | 21271 |
| AGE60686.1 | KC522412_p50 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 29513 | 29995 |
| AGE60650.1 | KC522412_p14 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10126 | 10638 |