Genomic map of Pseudoalteromonas phage TW1 (KC542353)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC542353
Definition
Pseudoalteromonas phage TW1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
39940
Host Name
Pseudoalteromonas phenolica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
62
%GC
40.18
Number of singletons
16
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGR46562.1 KC542353_p46 terminase small subunit phrog_606 terminase small subunit head and packaging 1 30729 31217
AGR46541.1 KC542353_p25 hypothetical protein phrog_35489 unknown function unknown function -1 17989 18285
AGR46566.1 KC542353_p50 hypothetical protein phrog_15819 unknown function unknown function -1 33320 34228
AGR46521.1 KC542353_p5 hypothetical protein phrog_786 unknown function unknown function 1 1429 1821
AGR46565.1 KC542353_p49 hypothetical protein phrog_9369 unknown function unknown function -1 33163 33333
AGR46560.1 KC542353_p44 hypothetical protein phrog_2776 unknown function unknown function 1 29670 30245
AGR46550.1 KC542353_p34 hypothetical protein phrog_11517 unknown function unknown function -1 21957 22361
AGR46524.1 KC542353_p8 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 2469 3002
AGR46538.1 KC542353_p22 HNH endonuclease domain-containing protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 14717 15430
AGR46571.1 KC542353_p55 hypothetical protein phrog_760 unknown function unknown function 1 35978 37120
AGR46549.1 KC542353_p33 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21350 21916
AGR46517.1 KC542353_p1 hypothetical protein phrog_23168 unknown function unknown function 1 1 558
AGR46533.1 KC542353_p17 hypothetical protein phrog_329 minor tail protein tail 1 9056 9463
AGR46557.1 KC542353_p41 hypothetical protein singleton unknown function unknown function 1 28352 28549
AGR46531.1 KC542353_p15 hypothetical protein phrog_384 virion structural protein head and packaging 1 8086 8556
AGR46536.1 KC542353_p20 hypothetical protein singleton unknown function unknown function -1 13966 14166
AGR46530.1 KC542353_p14 tail tape measure domain-containing protein phrog_1538 tail length tape measure protein tail 1 6059 8086
AGR46543.1 KC542353_p27 hypothetical protein phrog_3108 unknown function unknown function -1 18640 19143
AGR46525.1 KC542353_p9 hypothetical protein phrog_782 unknown function unknown function 1 2999 3439
AGR46569.1 KC542353_p53 hypothetical protein singleton unknown function unknown function 1 35131 35304
AGR46576.1 KC542353_p60 hypothetical protein singleton unknown function unknown function -1 39008 39202
AGR46551.1 KC542353_p35 exodeoxyribonuclease 8 domain-containing protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 22358 23218
AGR46554.1 KC542353_p38 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 25868 27403
AGR46548.1 KC542353_p32 hypothetical protein phrog_1770 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 20844 21317
AGR46567.1 KC542353_p51 hypothetical protein singleton unknown function unknown function 1 34647 34931
AGR46520.1 KC542353_p4 hypothetical protein phrog_8935 unknown function unknown function 1 1084 1428
AGR46537.1 KC542353_p21 hypothetical protein singleton unknown function unknown function 1 14249 14515
AGR46540.1 KC542353_p24 portal protein phrog_146 portal protein head and packaging -1 16551 17930
AGR46544.1 KC542353_p28 phosphoribosyl-ATP pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other -1 19140 19583
AGR46575.1 KC542353_p59 hypothetical protein phrog_38148 unknown function unknown function -1 38821 39018
AGR46570.1 KC542353_p54 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 35301 35921
AGR46519.1 KC542353_p3 hypothetical protein phrog_31633 unknown function unknown function 1 869 1102
AGR46522.1 KC542353_p6 hypothetical protein phrog_797 unknown function unknown function 1 1818 2180
AGR46552.1 KC542353_p36 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 23281 25092
AGR46547.1 KC542353_p31 hypothetical protein phrog_5434 unknown function unknown function -1 20207 20677
AGR46534.1 KC542353_p18 tail domain-containing protein phrog_469 tail protein tail 1 9463 11964
AGR46523.1 KC542353_p7 hypothetical protein singleton unknown function unknown function 1 2180 2464
AGR46526.1 KC542353_p10 hypothetical protein phrog_3427 holin lysis 1 3436 3873
AGR46559.1 KC542353_p43 hypothetical protein phrog_24860 unknown function unknown function 1 29285 29467
AGR46555.1 KC542353_p39 hypothetical protein singleton unknown function unknown function -1 27403 27651
AGR46556.1 KC542353_p40 hypothetical protein phrog_10496 unknown function unknown function 1 28170 28349
AGR46574.1 KC542353_p58 hypothetical protein phrog_2616 unknown function unknown function 1 38641 38808
AGR46527.1 KC542353_p11 hypothetical protein phrog_27118 unknown function unknown function 1 4133 4435
AGR46529.1 KC542353_p13 hypothetical protein phrog_791 unknown function unknown function 1 5417 6058
AGR46518.1 KC542353_p2 hypothetical protein singleton unknown function unknown function 1 574 816
AGR46532.1 KC542353_p16 hypothetical protein phrog_396 minor tail protein tail 1 8559 9059
AGR46572.1 KC542353_p56 hypothetical protein phrog_766 head decoration head and packaging 1 37123 37569
AGR46577.1 KC542353_p61 hypothetical protein singleton unknown function unknown function -1 39252 39578
AGR46578.1 KC542353_p62 hypothetical protein singleton unknown function unknown function -1 39589 39837
AGR46561.1 KC542353_p45 hypothetical protein phrog_3954 unknown function unknown function 1 30462 30725
AGR46539.1 KC542353_p23 head morphogenesis protein phrog_758 head morphogenesis head and packaging -1 15530 16561
AGR46558.1 KC542353_p42 N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 28759 29295
AGR46564.1 KC542353_p48 hypothetical protein singleton unknown function unknown function -1 32959 33129
AGR46535.1 KC542353_p19 hypothetical protein singleton unknown function unknown function 1 11993 13969
AGR46528.1 KC542353_p12 hypothetical protein phrog_1407 major tail protein tail 1 4909 5415
AGR46573.1 KC542353_p57 coat protein phrog_771 virion structural protein head and packaging 1 37583 38641
AGR46563.1 KC542353_p47 terminase large subunit phrog_2 terminase large subunit head and packaging 1 31204 32814
AGR46553.1 KC542353_p37 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 25085 25864
AGR46542.1 KC542353_p26 hypothetical protein singleton unknown function unknown function -1 18443 18640
AGR46546.1 KC542353_p30 hypothetical protein singleton unknown function unknown function -1 20040 20210
AGR46545.1 KC542353_p29 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 19585 20043
AGR46568.1 KC542353_p52 hypothetical protein singleton unknown function unknown function 1 34928 35131