| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC542353 |
Definition |
Pseudoalteromonas phage TW1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
PVOG |
Length |
39940 |
Host Name |
Pseudoalteromonas phenolica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
40.18 |
Number of singletons |
16 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGR46562.1 | KC542353_p46 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 30729 | 31217 |
| AGR46541.1 | KC542353_p25 | hypothetical protein | phrog_35489 | unknown function | unknown function | -1 | 17989 | 18285 |
| AGR46566.1 | KC542353_p50 | hypothetical protein | phrog_15819 | unknown function | unknown function | -1 | 33320 | 34228 |
| AGR46521.1 | KC542353_p5 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 1429 | 1821 |
| AGR46565.1 | KC542353_p49 | hypothetical protein | phrog_9369 | unknown function | unknown function | -1 | 33163 | 33333 |
| AGR46560.1 | KC542353_p44 | hypothetical protein | phrog_2776 | unknown function | unknown function | 1 | 29670 | 30245 |
| AGR46550.1 | KC542353_p34 | hypothetical protein | phrog_11517 | unknown function | unknown function | -1 | 21957 | 22361 |
| AGR46524.1 | KC542353_p8 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 2469 | 3002 |
| AGR46538.1 | KC542353_p22 | HNH endonuclease domain-containing protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 14717 | 15430 |
| AGR46571.1 | KC542353_p55 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 35978 | 37120 |
| AGR46549.1 | KC542353_p33 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 21350 | 21916 |
| AGR46517.1 | KC542353_p1 | hypothetical protein | phrog_23168 | unknown function | unknown function | 1 | 1 | 558 |
| AGR46533.1 | KC542353_p17 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 9056 | 9463 |
| AGR46557.1 | KC542353_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28352 | 28549 |
| AGR46531.1 | KC542353_p15 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 8086 | 8556 |
| AGR46536.1 | KC542353_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13966 | 14166 |
| AGR46530.1 | KC542353_p14 | tail tape measure domain-containing protein | phrog_1538 | tail length tape measure protein | tail | 1 | 6059 | 8086 |
| AGR46543.1 | KC542353_p27 | hypothetical protein | phrog_3108 | unknown function | unknown function | -1 | 18640 | 19143 |
| AGR46525.1 | KC542353_p9 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 2999 | 3439 |
| AGR46569.1 | KC542353_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35131 | 35304 |
| AGR46576.1 | KC542353_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39008 | 39202 |
| AGR46551.1 | KC542353_p35 | exodeoxyribonuclease 8 domain-containing protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 22358 | 23218 |
| AGR46554.1 | KC542353_p38 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 25868 | 27403 |
| AGR46548.1 | KC542353_p32 | hypothetical protein | phrog_1770 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 20844 | 21317 |
| AGR46567.1 | KC542353_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34647 | 34931 |
| AGR46520.1 | KC542353_p4 | hypothetical protein | phrog_8935 | unknown function | unknown function | 1 | 1084 | 1428 |
| AGR46537.1 | KC542353_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14249 | 14515 |
| AGR46540.1 | KC542353_p24 | portal protein | phrog_146 | portal protein | head and packaging | -1 | 16551 | 17930 |
| AGR46544.1 | KC542353_p28 | phosphoribosyl-ATP pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | -1 | 19140 | 19583 |
| AGR46575.1 | KC542353_p59 | hypothetical protein | phrog_38148 | unknown function | unknown function | -1 | 38821 | 39018 |
| AGR46570.1 | KC542353_p54 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 35301 | 35921 |
| AGR46519.1 | KC542353_p3 | hypothetical protein | phrog_31633 | unknown function | unknown function | 1 | 869 | 1102 |
| AGR46522.1 | KC542353_p6 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 1818 | 2180 |
| AGR46552.1 | KC542353_p36 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 23281 | 25092 |
| AGR46547.1 | KC542353_p31 | hypothetical protein | phrog_5434 | unknown function | unknown function | -1 | 20207 | 20677 |
| AGR46534.1 | KC542353_p18 | tail domain-containing protein | phrog_469 | tail protein | tail | 1 | 9463 | 11964 |
| AGR46523.1 | KC542353_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2180 | 2464 |
| AGR46526.1 | KC542353_p10 | hypothetical protein | phrog_3427 | holin | lysis | 1 | 3436 | 3873 |
| AGR46559.1 | KC542353_p43 | hypothetical protein | phrog_24860 | unknown function | unknown function | 1 | 29285 | 29467 |
| AGR46555.1 | KC542353_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27403 | 27651 |
| AGR46556.1 | KC542353_p40 | hypothetical protein | phrog_10496 | unknown function | unknown function | 1 | 28170 | 28349 |
| AGR46574.1 | KC542353_p58 | hypothetical protein | phrog_2616 | unknown function | unknown function | 1 | 38641 | 38808 |
| AGR46527.1 | KC542353_p11 | hypothetical protein | phrog_27118 | unknown function | unknown function | 1 | 4133 | 4435 |
| AGR46529.1 | KC542353_p13 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 5417 | 6058 |
| AGR46518.1 | KC542353_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 574 | 816 |
| AGR46532.1 | KC542353_p16 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 8559 | 9059 |
| AGR46572.1 | KC542353_p56 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 37123 | 37569 |
| AGR46577.1 | KC542353_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39252 | 39578 |
| AGR46578.1 | KC542353_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39589 | 39837 |
| AGR46561.1 | KC542353_p45 | hypothetical protein | phrog_3954 | unknown function | unknown function | 1 | 30462 | 30725 |
| AGR46539.1 | KC542353_p23 | head morphogenesis protein | phrog_758 | head morphogenesis | head and packaging | -1 | 15530 | 16561 |
| AGR46558.1 | KC542353_p42 | N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 28759 | 29295 |
| AGR46564.1 | KC542353_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32959 | 33129 |
| AGR46535.1 | KC542353_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11993 | 13969 |
| AGR46528.1 | KC542353_p12 | hypothetical protein | phrog_1407 | major tail protein | tail | 1 | 4909 | 5415 |
| AGR46573.1 | KC542353_p57 | coat protein | phrog_771 | virion structural protein | head and packaging | 1 | 37583 | 38641 |
| AGR46563.1 | KC542353_p47 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 31204 | 32814 |
| AGR46553.1 | KC542353_p37 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 25085 | 25864 |
| AGR46542.1 | KC542353_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18443 | 18640 |
| AGR46546.1 | KC542353_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20040 | 20210 |
| AGR46545.1 | KC542353_p29 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 19585 | 20043 |
| AGR46568.1 | KC542353_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34928 | 35131 |