Genomic map of Streptococcus phage phiD12 (KC581799)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC581799
Definition
Streptococcus phage phiD12, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
50470
Host Name
Streptococcus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
39.63
Number of singletons
3
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGF89780.1 KC581799_p52 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other -1 45235 46302
AGF89741.1 KC581799_p13 hypothetical protein phrog_33 distal tail protein Dit tail -1 11873 12595
AGF89763.1 KC581799_p35 S-adenosylmethionine synthetase phrog_1569 unknown function unknown function -1 28986 30023
AGF89782.1 KC581799_p54 Cro/C1-type HTH DNA-binding protein phrog_3 transcriptional repressor transcription regulation -1 47025 47225
AGF89757.1 KC581799_p29 hypothetical protein phrog_3782 unknown function unknown function -1 23964 24176
AGF89738.1 KC581799_p10 hypothetical protein phrog_1164 unknown function unknown function -1 6731 7099
AGF89774.1 KC581799_p46 phage polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 37835 39205
AGF89736.1 KC581799_p8 N-acetylmuramoyl-L-alanine amidase phrog_2742 endolysin lysis -1 4882 6351
AGF89783.1 KC581799_p55 phage transcriptional repressor phrog_4 transcriptional repressor transcription regulation 1 47362 48051
AGF89769.1 KC581799_p41 hypothetical protein singleton unknown function unknown function 1 35429 35635
AGF89760.1 KC581799_p32 DNA methylase phrog_498 DNA methyltransferase other -1 25776 27887
AGF89756.1 KC581799_p28 hypothetical protein phrog_4709 unknown function unknown function -1 23732 23962
AGF89777.1 KC581799_p49 hypothetical protein phrog_30403 unknown function unknown function 1 40919 42100
AGF89768.1 KC581799_p40 D5-like protein phrog_1883 DNA helicase DNA, RNA and nucleotide metabolism -1 32930 35212
AGF89751.1 KC581799_p23 Clp protease phrog_94 head maturation protease head and packaging -1 19151 19846
AGF89733.1 KC581799_p5 recombinase phrog_95 integrase integration and excision -1 2236 3321
AGF89753.1 KC581799_p25 hypothetical protein phrog_1987 unknown function unknown function -1 21180 21524
AGF89735.1 KC581799_p7 hypothetical protein phrog_2996 unknown function unknown function -1 4614 4775
AGF89742.1 KC581799_p14 myosin tail phrog_58 tail length tape measure protein tail -1 12592 15450
AGF89771.1 KC581799_p43 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 35926 37047
AGF89744.1 KC581799_p16 hypothetical protein phrog_709 unknown function unknown function -1 15633 16052
AGF89730.1 KC581799_p2 hypothetical protein singleton unknown function unknown function -1 580 678
AGF89786.1 KC581799_p58 DNA polymerase IV phrog_1268 DNA polymerase DNA, RNA and nucleotide metabolism 1 48404 49819
AGF89731.1 KC581799_p3 transposase phrog_36562 transposase integration and excision 1 885 1085
AGF89740.1 KC581799_p12 gp58-like protein phrog_1330 tail protein tail -1 7324 11871
AGF89788.1 KC581799_p60 hypothetical protein phrog_16386 unknown function unknown function 1 50171 50470
AGF89739.1 KC581799_p11 hypothetical protein phrog_1137 unknown function unknown function -1 7105 7311
AGF89754.1 KC581799_p26 terminase large subunit phrog_9 terminase large subunit head and packaging -1 21619 23211
AGF89781.1 KC581799_p53 DNA methylase phrog_67 DNA methyltransferase other -1 46295 47023
AGF89787.1 KC581799_p59 YolD-like protein phrog_16307 unknown function unknown function 1 49816 50184
AGF89759.1 KC581799_p31 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other -1 24499 25779
AGF89732.1 KC581799_p4 transposase phrog_2199 transposase integration and excision 1 1101 2138
AGF89785.1 KC581799_p57 hypothetical protein phrog_38371 unknown function unknown function 1 48271 48399
AGF89747.1 KC581799_p19 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 16968 17336
AGF89775.1 KC581799_p47 phage polymerase phrog_10285 DNA polymerase DNA, RNA and nucleotide metabolism 1 39215 39898
AGF89779.1 KC581799_p51 dynein-related subfamily protein singleton unknown function unknown function -1 43404 45242
AGF89765.1 KC581799_p37 hypothetical protein phrog_36 transcriptional regulator transcription regulation -1 30449 30952
AGF89758.1 KC581799_p30 hypothetical protein phrog_6231 unknown function unknown function -1 24178 24426
AGF89772.1 KC581799_p44 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 37052 37600
AGF89761.1 KC581799_p33 hypothetical protein phrog_2308 unknown function unknown function -1 27859 28320
AGF89764.1 KC581799_p36 hypothetical protein phrog_2555 unknown function unknown function -1 30068 30250
AGF89743.1 KC581799_p15 hypothetical protein phrog_3033 unknown function unknown function -1 15469 15600
AGF89729.1 KC581799_p1 site-specific recombinase phrog_18012 unknown function unknown function -1 1 333
AGF89746.1 KC581799_p18 hypothetical protein phrog_78 tail terminator connector -1 16635 16961
AGF89748.1 KC581799_p20 phage head-tail joining protein phrog_25 head closure Hc1 connector -1 17329 17667
AGF89784.1 KC581799_p56 hypothetical protein phrog_27023 unknown function unknown function 1 48054 48281
AGF89767.1 KC581799_p39 VRR-NUC family protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 32302 32583
AGF89737.1 KC581799_p9 holin phrog_199 holin lysis -1 6358 6753
AGF89773.1 KC581799_p45 hypothetical protein phrog_2442 unknown function unknown function 1 37619 37786
AGF89762.1 KC581799_p34 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism -1 28619 28984
AGF89745.1 KC581799_p17 hypothetical protein phrog_88 major tail protein tail -1 16064 16633
AGF89750.1 KC581799_p22 phage capsid family phrog_10 major head protein head and packaging -1 17927 19132
AGF89776.1 KC581799_p48 hypothetical protein phrog_2513 unknown function unknown function -1 39937 40506
AGF89766.1 KC581799_p38 SNF2 family protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 30945 32321
AGF89752.1 KC581799_p24 phage portal protein phrog_12 portal protein head and packaging -1 19839 21122
AGF89734.1 KC581799_p6 recombinase phrog_95 integrase integration and excision -1 3321 4556
AGF89749.1 KC581799_p21 phage gp6-like head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 17667 17927
AGF89755.1 KC581799_p27 terminase small subunit phrog_83 terminase small subunit head and packaging -1 23208 23681
AGF89778.1 KC581799_p50 LlaJI restriction endonuclease phrog_16589 restriction endonuclease DNA, RNA and nucleotide metabolism -1 42101 43390
AGF89770.1 KC581799_p42 hypothetical protein phrog_408 unknown function unknown function 1 35619 35933