| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KC758116 |
Definition |
Pseudomonas phage LKO4, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yuavirus; Pseudomonas virus LKO4. |
DB of origin |
PVOG |
Length |
61818 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
89 |
%GC |
64.42 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGI11291.1 | KC758116_p55 | hypothetical protein | phrog_21134 | unknown function | unknown function | 1 | 33717 | 34115 |
| AGI11240.1 | KC758116_p4 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 2955 | 3500 |
| AGI11310.1 | KC758116_p74 | head-tail connector protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 46721 | 47239 |
| AGI11284.1 | KC758116_p48 | ribonuclease T | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30286 | 30858 |
| AGI11317.1 | KC758116_p81 | minor tail protein | phrog_3336 | tail length tape measure protein | tail | 1 | 50870 | 53695 |
| AGI11273.1 | KC758116_p37 | hypothetical protein | phrog_7569 | unknown function | unknown function | 1 | 26853 | 27329 |
| AGI11263.1 | KC758116_p27 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 20066 | 20527 |
| AGI11289.1 | KC758116_p53 | hypothetical protein | phrog_10108 | unknown function | unknown function | 1 | 33156 | 33485 |
| AGI11286.1 | KC758116_p50 | hypothetical protein | phrog_8776 | unknown function | unknown function | 1 | 31131 | 31751 |
| AGI11242.1 | KC758116_p6 | exodeoxyribonuclease V | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 4583 | 5776 |
| AGI11264.1 | KC758116_p28 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 20520 | 20918 |
| AGI11319.1 | KC758116_p83 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 55249 | 56250 |
| AGI11307.1 | KC758116_p71 | Rz protein | phrog_1327 | Rz-like spanin | lysis | 1 | 45110 | 45679 |
| AGI11254.1 | KC758116_p18 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 14630 | 15190 |
| AGI11255.1 | KC758116_p19 | hypothetical protein | phrog_19970 | unknown function | unknown function | 1 | 15203 | 15316 |
| AGI11320.1 | KC758116_p84 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 56252 | 57922 |
| AGI11265.1 | KC758116_p29 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 20903 | 21229 |
| AGI11274.1 | KC758116_p39 | hypothetical protein | phrog_13330 | unknown function | unknown function | 1 | 27326 | 27655 |
| AGI11303.1 | KC758116_p67 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 42659 | 43591 |
| AGI11262.1 | KC758116_p26 | hypothetical protein | phrog_20455 | unknown function | unknown function | 1 | 19875 | 20069 |
| AGI11279.1 | KC758116_p43 | hypothetical protein | phrog_17285 | unknown function | unknown function | 1 | 28530 | 28697 |
| AGI11293.1 | KC758116_p57 | hypothetical protein | phrog_6858 | unknown function | unknown function | 1 | 34304 | 34555 |
| AGI11299.1 | KC758116_p63 | hypothetical protein | phrog_9943 | unknown function | unknown function | 1 | 39712 | 39831 |
| AGI11251.1 | KC758116_p15 | hypothetical protein | phrog_9252 | DNA repair photolyase | DNA, RNA and nucleotide metabolism | 1 | 11531 | 12973 |
| AGI11237.1 | KC758116_p1 | hypothetical protein | phrog_6420 | unknown function | unknown function | 1 | 68 | 412 |
| AGI11247.1 | KC758116_p11 | hypothetical protein | phrog_4445 | unknown function | unknown function | 1 | 9105 | 9368 |
| AGI11300.1 | KC758116_p64 | GIY-YIG homing endonuclease | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39831 | 40418 |
| AGI11325.1 | KC758116_p89 | hypothetical protein | phrog_5363 | unknown function | unknown function | 1 | 61333 | 61818 |
| AGI11278.1 | KC758116_p42 | hypothetical protein | phrog_9190 | unknown function | unknown function | 1 | 28264 | 28533 |
| AGI11261.1 | KC758116_p25 | hypothetical protein | phrog_8389 | unknown function | unknown function | 1 | 19681 | 19878 |
| AGI11285.1 | KC758116_p49 | RNA polymerase-binding protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 30851 | 31042 |
| AGI11250.1 | KC758116_p14 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11088 | 11468 |
| AGI11288.1 | KC758116_p52 | hypothetical protein | phrog_3628 | unknown function | unknown function | 1 | 32323 | 33075 |
| AGI11283.1 | KC758116_p47 | hypothetical protein | phrog_5016 | unknown function | unknown function | 1 | 30003 | 30284 |
| AGI11318.1 | KC758116_p82 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 53705 | 55234 |
| AGI11294.1 | KC758116_p58 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 34555 | 34971 |
| AGI11290.1 | KC758116_p54 | hypothetical protein | phrog_8760 | unknown function | unknown function | 1 | 33508 | 33720 |
| AGI11276.1 | KC758116_p40 | hypothetical protein | phrog_8020 | unknown function | unknown function | 1 | 27673 | 27969 |
| AGI11306.1 | KC758116_p70 | hypothetical protein | phrog_8884 | unknown function | unknown function | 1 | 44936 | 45106 |
| AGI11269.1 | KC758116_p33 | hypothetical protein | phrog_8203 | unknown function | unknown function | 1 | 24395 | 25573 |
| AGI11309.1 | KC758116_p73 | endolysin | phrog_669 | endolysin | lysis | 1 | 45996 | 46721 |
| AGI11246.1 | KC758116_p10 | hypothetical protein | phrog_7790 | unknown function | unknown function | 1 | 8411 | 9094 |
| AGI11248.1 | KC758116_p12 | hypothetical protein | phrog_6364 | unknown function | unknown function | 1 | 9378 | 10253 |
| AGI11249.1 | KC758116_p13 | pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family | phrog_7093 | threonine dehydratase | other | 1 | 10255 | 11091 |
| AGI11267.1 | KC758116_p31 | hypothetical protein | phrog_2053 | unknown function | unknown function | 1 | 23664 | 23879 |
| AGI11314.1 | KC758116_p78 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 49689 | 50147 |
| AGI11297.1 | KC758116_p61 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 36569 | 38116 |
| AGI11287.1 | KC758116_p51 | hypothetical protein | phrog_15793 | unknown function | unknown function | 1 | 31876 | 32139 |
| AGI11324.1 | KC758116_p88 | tail component | phrog_1101 | tail protein | tail | 1 | 59162 | 61333 |
| AGI11305.1 | KC758116_p69 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 44303 | 44908 |
| AGI11257.1 | KC758116_p21 | phosphohydrolase | phrog_6047 | unknown function | unknown function | 1 | 16381 | 17016 |
| AGI11239.1 | KC758116_p3 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 2542 | 2895 |
| AGI11256.1 | KC758116_p20 | thymidylate synthase/dCMP hydroxymethylase | phrog_5131 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 15313 | 16368 |
| AGI11308.1 | KC758116_p72 | holin | phrog_8226 | holin | lysis | 1 | 45676 | 46011 |
| AGI11282.1 | KC758116_p46 | hypothetical protein | phrog_35475 | unknown function | unknown function | 1 | 29897 | 30157 |
| AGI11311.1 | KC758116_p75 | tail attachment protein | phrog_161 | head closure Hc1 | connector | 1 | 47243 | 47611 |
| AGI11323.1 | KC758116_p87 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 58975 | 59178 |
| AGI11270.1 | KC758116_p34 | hypothetical protein | phrog_9297 | unknown function | unknown function | 1 | 25570 | 25911 |
| AGI11275.1 | KC758116_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27320 | 27532 |
| AGI11302.1 | KC758116_p66 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 41682 | 42464 |
| AGI11252.1 | KC758116_p16 | nucleoside triphosphate hydrolases | phrog_800 | terminase small subunit | head and packaging | 1 | 13028 | 13591 |
| AGI11304.1 | KC758116_p68 | hypothetical protein | phrog_15312 | virion structural protein | head and packaging | 1 | 43697 | 44275 |
| AGI11281.1 | KC758116_p45 | hypothetical protein | phrog_16645 | unknown function | unknown function | 1 | 29320 | 30003 |
| AGI11312.1 | KC758116_p76 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 47608 | 48060 |
| AGI11315.1 | KC758116_p79 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 50171 | 50437 |
| AGI11258.1 | KC758116_p22 | hypothetical protein | phrog_14034 | unknown function | unknown function | 1 | 16991 | 17218 |
| AGI11253.1 | KC758116_p17 | hypothetical protein | phrog_2396 | unknown function | unknown function | 1 | 13603 | 14574 |
| AGI11295.1 | KC758116_p59 | hypothetical protein | phrog_7839 | unknown function | unknown function | 1 | 34971 | 35336 |
| AGI11313.1 | KC758116_p77 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 48094 | 49626 |
| AGI11280.1 | KC758116_p44 | hypothetical protein | phrog_4301 | unknown function | unknown function | 1 | 28676 | 29293 |
| AGI11260.1 | KC758116_p24 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17573 | 19567 |
| AGI11301.1 | KC758116_p65 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 40405 | 41613 |
| AGI11292.1 | KC758116_p56 | hypothetical protein | phrog_11606 | unknown function | unknown function | 1 | 34112 | 34300 |
| AGI11316.1 | KC758116_p80 | phage morphogenesis protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 50421 | 50867 |
| AGI11259.1 | KC758116_p23 | hypothetical protein | phrog_5839 | unknown function | unknown function | 1 | 17187 | 17573 |
| AGI11322.1 | KC758116_p86 | tail assembly protein | phrog_1180 | tail assembly chaperone | tail | 1 | 58742 | 58975 |
| AGI11272.1 | KC758116_p36 | pyrophosphatase | phrog_9147 | unknown function | unknown function | 1 | 26251 | 26856 |
| AGI11268.1 | KC758116_p32 | hypothetical protein | phrog_14626 | unknown function | unknown function | 1 | 23991 | 24356 |
| AGI11298.1 | KC758116_p62 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 38174 | 39715 |
| AGI11238.1 | KC758116_p2 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 840 | 2534 |
| AGI11244.1 | KC758116_p8 | hypothetical protein | phrog_17271 | unknown function | unknown function | 1 | 7657 | 7845 |
| AGI11266.1 | KC758116_p30 | primase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 21242 | 23653 |
| AGI11277.1 | KC758116_p41 | hypothetical protein | phrog_9341 | unknown function | unknown function | 1 | 27972 | 28259 |
| AGI11245.1 | KC758116_p9 | uracil-DNA glycosylase | phrog_12275 | unknown function | unknown function | 1 | 7805 | 8311 |
| AGI11241.1 | KC758116_p5 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 3642 | 4481 |
| AGI11321.1 | KC758116_p85 | minor tail protein | phrog_778 | tail assembly protein | tail | 1 | 57919 | 58728 |
| AGI11243.1 | KC758116_p7 | ribonucleotide-diphosphate reductase subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 5798 | 7660 |
| AGI11296.1 | KC758116_p60 | terminase small subunit | phrog_4044 | terminase small subunit | head and packaging | 1 | 36042 | 36569 |
| AGI11271.1 | KC758116_p35 | hypothetical protein | phrog_8938 | unknown function | unknown function | 1 | 25979 | 26248 |