Genomic map of Pseudomonas phage LKA5 (KC900378)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KC900378
Definition
Pseudomonas phage LKA5, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Hollowayvirus; unclassified Hollowayvirus.
DB of origin
PVOG
Length
64746
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
63.28
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AGR46415.1 KC900378_p63 hypothetical protein phrog_22880 unknown function unknown function 1 61716 62135
AGR46406.1 KC900378_p54 hypothetical protein phrog_11362 unknown function unknown function 1 39774 42371
AGR46398.1 KC900378_p46 structural protein phrog_399 structural protein head and packaging 1 32381 33058
AGR46373.1 KC900378_p22 hypothetical protein phrog_19766 unknown function unknown function -1 15382 15501
AGR46364.1 KC900378_p12 hypothetical protein phrog_29321 unknown function unknown function 1 8463 9305
AGR46376.1 KC900378_p24 hypothetical protein phrog_6033 unknown function unknown function -1 15866 16087
AGR46418.1 KC900378_p66 integrase phrog_1 integrase integration and excision 1 63511 64746
AGR46401.1 KC900378_p49 hypothetical protein phrog_11163 unknown function unknown function 1 33775 34098
AGR46394.1 KC900378_p42 hypothetical protein phrog_479 unknown function unknown function 1 28474 29604
AGR46410.1 KC900378_p58 hypothetical protein phrog_11358 unknown function unknown function 1 48117 59708
AGR46366.1 KC900378_p14 nucleoid-associated protein phrog_3767 nucleoid associated protein DNA, RNA and nucleotide metabolism -1 9643 10698
AGR46408.1 KC900378_p56 hypothetical protein phrog_10969 unknown function unknown function 1 43528 45420
AGR46374.1 KC900378_p21 hypothetical protein phrog_31234 unknown function unknown function -1 15233 15706
AGR46363.1 KC900378_p11 hypothetical protein phrog_35164 unknown function unknown function 1 8142 8366
AGR46372.1 KC900378_p20 DNA repair protein phrog_7838 exonuclease DNA, RNA and nucleotide metabolism -1 14481 15236
AGR46390.1 KC900378_p38 hypothetical protein phrog_2623 unknown function unknown function -1 23776 24000
AGR46407.1 KC900378_p55 hypothetical protein phrog_12240 unknown function unknown function 1 42364 43527
AGR46361.1 KC900378_p9 hypothetical protein phrog_3190 unknown function unknown function -1 5692 6120
AGR46358.1 KC900378_p6 hypothetical protein phrog_5928 unknown function unknown function -1 4216 4596
AGR46353.1 KC900378_p1 AlpA family transcriptional regulator phrog_66 excisionase and transcriptional regulator integration and excision -1 1 234
AGR46375.1 KC900378_p23 hypothetical protein phrog_17194 unknown function unknown function -1 15498 15869
AGR46404.1 KC900378_p52 structural protein phrog_8040 head closure Hc3 connector 1 37921 39111
AGR46392.1 KC900378_p40 terminase large subunit phrog_2 terminase large subunit head and packaging 1 24716 25999
AGR46396.1 KC900378_p44 structural protein phrog_8260 virion structural protein head and packaging 1 30923 31447
AGR46388.1 KC900378_p36 NinG family protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 22586 23200
AGR46357.1 KC900378_p5 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 2453 4219
AGR46399.1 KC900378_p47 hypothetical protein phrog_8397 CsrA-like regulator transcription regulation 1 33055 33261
AGR46412.1 KC900378_p60 endolysin phrog_7 endolysin lysis 1 60044 60577
AGR46413.1 KC900378_p61 hypothetical protein phrog_13 Rz-like spanin lysis 1 60574 61092
AGR46381.1 KC900378_p29 hypothetical protein phrog_15496 unknown function unknown function -1 18068 18241
AGR46409.1 KC900378_p57 hypothetical protein phrog_11341 unknown function unknown function 1 45955 48117
AGR46417.1 KC900378_p65 hypothetical protein phrog_8717 unknown function unknown function -1 62578 63090
AGR46391.1 KC900378_p39 terminase small subunit phrog_1482 terminase small subunit head and packaging 1 24357 24719
AGR46362.1 KC900378_p10 C-5 cytosine-specific DNA methylase phrog_116 DNA methyltransferase other -1 6117 8027
AGR46403.1 KC900378_p51 hypothetical protein phrog_11272 unknown function unknown function 1 34958 37921
AGR46383.1 KC900378_p31 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 18985 19770
AGR46378.1 KC900378_p26 hypothetical protein phrog_1934 unknown function unknown function -1 16217 16687
AGR46380.1 KC900378_p28 hypothetical protein phrog_9165 unknown function unknown function -1 17268 17480
AGR46414.1 KC900378_p62 structural protein phrog_1954 virion structural protein head and packaging 1 61103 61696
AGR46379.1 KC900378_p27 hypothetical protein phrog_5527 transcriptional regulator transcription regulation -1 16862 17233
AGR46354.1 KC900378_p2 hypothetical protein phrog_7614 unknown function unknown function -1 364 795
AGR46405.1 KC900378_p53 hypothetical protein phrog_8123 unknown function unknown function 1 39179 39769
AGR46411.1 KC900378_p59 holin phrog_4237 holin lysis 1 59803 60060
AGR46365.1 KC900378_p13 LexA-like protein phrog_3502 unknown function unknown function -1 9437 9646
AGR46416.1 KC900378_p64 hypothetical protein phrog_3944 unknown function unknown function 1 62308 62574
AGR46389.1 KC900378_p37 hypothetical protein phrog_8117 unknown function unknown function 1 23279 23773
AGR46368.1 KC900378_p16 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 11678 12181
AGR46382.1 KC900378_p30 hypothetical protein phrog_2707 unknown function unknown function 1 18663 18932
AGR46400.1 KC900378_p48 hypothetical protein phrog_644 unknown function unknown function 1 33242 33649
AGR46387.1 KC900378_p35 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 22035 22586
AGR46384.1 KC900378_p32 Cro-like protein phrog_35 transcriptional repressor transcription regulation 1 19879 20079
AGR46397.1 KC900378_p45 hypothetical protein phrog_11782 unknown function unknown function 1 31512 32384
AGR46386.1 KC900378_p34 hypothetical protein phrog_6028 unknown function unknown function 1 21185 22042
AGR46402.1 KC900378_p50 structural protein phrog_14189 unknown function unknown function 1 34098 34955
AGR46370.1 KC900378_p18 hypothetical protein phrog_30798 unknown function unknown function -1 12900 13412
AGR46371.1 KC900378_p19 hypothetical protein phrog_16469 unknown function unknown function -1 13460 14476
AGR46360.1 KC900378_p8 hypothetical protein phrog_874 unknown function unknown function -1 5078 5695
AGR46395.1 KC900378_p43 capsid protein phrog_334 major head protein head and packaging 1 29617 30909
AGR46377.1 KC900378_p25 hypothetical protein phrog_6125 unknown function unknown function -1 16071 16220
AGR46355.1 KC900378_p3 hypothetical protein phrog_3765 unknown function unknown function -1 792 914
AGR46369.1 KC900378_p17 DNA polymerase associated exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 12185 12790
AGR46393.1 KC900378_p41 portal protein phrog_156 portal protein head and packaging 1 26009 28327
AGR46359.1 KC900378_p7 hypothetical protein phrog_3230 unknown function unknown function -1 4593 5081
AGR46356.1 KC900378_p4 hypothetical protein phrog_9434 unknown function unknown function -1 907 2343
AGR46367.1 KC900378_p15 recombination associated protein phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism -1 10725 11651
AGR46385.1 KC900378_p33 hypothetical protein phrog_11527 unknown function unknown function 1 20182 21198