| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KF188414 |
Definition |
Mycobacterium phage ABCat, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
PVOG |
Length |
76131 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
143 |
%GC |
63.04 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AGR48864.1 | KF188414_p24 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21445 | 22266 |
| AGR48963.1 | KF188414_p123 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 69374 | 69553 |
| AGR48899.1 | KF188414_p59 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43160 | 43465 |
| AGR48888.1 | KF188414_p48 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37122 | 37517 |
| AGR48927.1 | KF188414_p87 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54829 | 54951 |
| AGR48968.1 | KF188414_p128 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70976 | 71230 |
| AGR48856.1 | KF188414_p16 | hypothetical protein | phrog_2805 | minor tail protein | tail | 1 | 10589 | 10969 |
| AGR48960.1 | KF188414_p120 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68892 | 69059 |
| AGR48965.1 | KF188414_p125 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 69668 | 69829 |
| AGR48866.1 | KF188414_p26 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24676 | 27516 |
| AGR48970.1 | KF188414_p130 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 71298 | 71666 |
| AGR48911.1 | KF188414_p71 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48146 | 48319 |
| AGR48847.1 | KF188414_p7 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1956 | 2267 |
| AGR48975.1 | KF188414_p135 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 72984 | 73220 |
| AGR48906.1 | KF188414_p66 | Erf protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45908 | 46630 |
| AGR48978.1 | KF188414_p138 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 74185 | 74358 |
| AGR48884.1 | KF188414_p44 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36349 | 36516 |
| AGR48929.1 | KF188414_p89 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 56328 | 57131 |
| AGR48917.1 | KF188414_p77 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50134 | 50484 |
| AGR48974.1 | KF188414_p134 | hypothetical protein | phrog_3730 | unknown function | unknown function | -1 | 72869 | 72994 |
| AGR48977.1 | KF188414_p137 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73788 | 74180 |
| AGR48865.1 | KF188414_p25 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22283 | 24679 |
| AGR48959.1 | KF188414_p119 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 68482 | 68895 |
| AGR48868.1 | KF188414_p28 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28541 | 28969 |
| AGR48859.1 | KF188414_p19 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12469 | 12930 |
| AGR48945.1 | KF188414_p105 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63757 | 64020 |
| AGR48948.1 | KF188414_p108 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 64712 | 65305 |
| AGR48877.1 | KF188414_p37 | HNH endonuclease | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33534 | 34121 |
| AGR48914.1 | KF188414_p74 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48962 | 49279 |
| AGR48881.1 | KF188414_p41 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35336 | 35824 |
| AGR48852.1 | KF188414_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7927 | 9420 |
| AGR48854.1 | KF188414_p14 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 9678 | 10244 |
| AGR48892.1 | KF188414_p52 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39594 | 40367 |
| AGR48949.1 | KF188414_p109 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65316 | 66101 |
| AGR48895.1 | KF188414_p55 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41214 | 41351 |
| AGR48926.1 | KF188414_p86 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54488 | 54856 |
| AGR48880.1 | KF188414_p40 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34872 | 35339 |
| AGR48981.1 | KF188414_p141 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 74917 | 75264 |
| AGR48918.1 | KF188414_p78 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50477 | 51739 |
| AGR48932.1 | KF188414_p92 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57560 | 58012 |
| AGR48871.1 | KF188414_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 29702 | 31135 |
| AGR48972.1 | KF188414_p132 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 72136 | 72465 |
| AGR48841.1 | KF188414_p1 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| AGR48950.1 | KF188414_p110 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 66098 | 66250 |
| AGR48858.1 | KF188414_p18 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 11378 | 12349 |
| AGR48912.1 | KF188414_p72 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48322 | 48555 |
| AGR48922.1 | KF188414_p82 | hypothetical protein | phrog_3836 | unknown function | unknown function | 1 | 52370 | 52735 |
| AGR48860.1 | KF188414_p20 | tail assembly chaperone | phrog_5940 | tail assembly chaperone | tail | 1 | 13062 | 13340 |
| AGR48938.1 | KF188414_p98 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 60753 | 61559 |
| AGR48896.1 | KF188414_p56 | pentapeptide repeat family protein | phrog_923 | unknown function | unknown function | 1 | 41348 | 42193 |
| AGR48980.1 | KF188414_p140 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74597 | 74881 |
| AGR48870.1 | KF188414_p30 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29275 | 29559 |
| AGR48872.1 | KF188414_p32 | holin | phrog_526 | holin | lysis | 1 | 31139 | 31522 |
| AGR48900.1 | KF188414_p60 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43484 | 43591 |
| AGR48933.1 | KF188414_p93 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 58016 | 58138 |
| AGR48903.1 | KF188414_p63 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44214 | 44543 |
| AGR48902.1 | KF188414_p62 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43832 | 43993 |
| AGR48848.1 | KF188414_p8 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2303 | 4966 |
| AGR48908.1 | KF188414_p68 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46934 | 47404 |
| AGR48979.1 | KF188414_p139 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 74355 | 74591 |
| AGR48850.1 | KF188414_p10 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5183 | 6742 |
| AGR48893.1 | KF188414_p53 | immunity repressor | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40462 | 40893 |
| AGR48924.1 | KF188414_p84 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53091 | 53285 |
| AGR48952.1 | KF188414_p112 | hypothetical protein | phrog_6210 | unknown function | unknown function | 1 | 66453 | 66542 |
| AGR48928.1 | KF188414_p88 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54948 | 56273 |
| AGR48890.1 | KF188414_p50 | integrase | phrog_1 | integrase | integration and excision | 1 | 38357 | 39238 |
| AGR48931.1 | KF188414_p91 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57405 | 57563 |
| AGR48946.1 | KF188414_p106 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64031 | 64405 |
| AGR48867.1 | KF188414_p27 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27517 | 28461 |
| AGR48944.1 | KF188414_p104 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63536 | 63760 |
| AGR48907.1 | KF188414_p67 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46623 | 46934 |
| AGR48956.1 | KF188414_p116 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67872 | 68045 |
| AGR48920.1 | KF188414_p80 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51906 | 52181 |
| AGR48973.1 | KF188414_p133 | hypothetical protein | phrog_21747 | unknown function | unknown function | -1 | 72477 | 72863 |
| AGR48901.1 | KF188414_p61 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43599 | 43832 |
| AGR48844.1 | KF188414_p4 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| AGR48887.1 | KF188414_p47 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36976 | 37122 |
| AGR48964.1 | KF188414_p124 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 69553 | 69684 |
| AGR48913.1 | KF188414_p73 | hypothetical protein | phrog_289 | GTP-binding domain | other | 1 | 48552 | 48965 |
| AGR48875.1 | KF188414_p35 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32704 | 33120 |
| AGR48939.1 | KF188414_p99 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 61561 | 61758 |
| AGR48851.1 | KF188414_p11 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6745 | 7839 |
| AGR48855.1 | KF188414_p15 | hypothetical protein | phrog_1531 | head closure | connector | 1 | 10257 | 10592 |
| AGR48930.1 | KF188414_p90 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57128 | 57388 |
| AGR48861.1 | KF188414_p21 | tapemeasure | phrog_2723 | tail length tape measure protein | tail | 1 | 13333 | 18066 |
| AGR48878.1 | KF188414_p38 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34244 | 34630 |
| AGR48876.1 | KF188414_p36 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33127 | 33372 |
| AGR48869.1 | KF188414_p29 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28966 | 29142 |
| AGR48863.1 | KF188414_p23 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19745 | 21424 |
| AGR48966.1 | KF188414_p126 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 70208 | 70471 |
| AGR48923.1 | KF188414_p83 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52732 | 53094 |
| AGR48905.1 | KF188414_p65 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45505 | 45915 |
| AGR48909.1 | KF188414_p69 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47404 | 47772 |
| AGR48936.1 | KF188414_p96 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 59011 | 60231 |
| AGR48971.1 | KF188414_p131 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 71663 | 72121 |
| AGR48951.1 | KF188414_p111 | hypothetical protein | phrog_8804 | unknown function | unknown function | 1 | 66247 | 66456 |
| AGR48976.1 | KF188414_p136 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 73236 | 73784 |
| AGR48916.1 | KF188414_p76 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49502 | 50152 |
| AGR48846.1 | KF188414_p6 | terminase small subunit | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| AGR48857.1 | KF188414_p17 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10947 | 11351 |
| AGR48962.1 | KF188414_p122 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 69240 | 69377 |
| AGR48940.1 | KF188414_p100 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61755 | 62111 |
| AGR48883.1 | KF188414_p43 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 36221 | 36349 |
| AGR48947.1 | KF188414_p107 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 64405 | 64722 |
| AGR48934.1 | KF188414_p94 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58140 | 58475 |
| AGR48915.1 | KF188414_p75 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49269 | 49505 |
| AGR48891.1 | KF188414_p51 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39377 | 39616 |
| AGR48862.1 | KF188414_p22 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18096 | 19757 |
| AGR48983.1 | KF188414_p143 | HNH endonuclease domain protein | phrog_589 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75550 | 75897 |
| AGR48897.1 | KF188414_p57 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42195 | 42341 |
| AGR48967.1 | KF188414_p127 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 70468 | 70857 |
| AGR48921.1 | KF188414_p81 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52156 | 52377 |
| AGR48898.1 | KF188414_p58 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42338 | 42616 |
| AGR48882.1 | KF188414_p42 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 35817 | 36113 |
| AGR48910.1 | KF188414_p70 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47769 | 48146 |
| AGR48942.1 | KF188414_p102 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 62428 | 62739 |
| AGR48919.1 | KF188414_p79 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51736 | 51924 |
| AGR48943.1 | KF188414_p103 | hypothetical protein | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62792 | 63082 |
| AGR48885.1 | KF188414_p45 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36513 | 36683 |
| AGR48879.1 | KF188414_p39 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34678 | 34869 |
| AGR48982.1 | KF188414_p142 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75339 | 75560 |
| AGR48842.1 | KF188414_p2 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| AGR48941.1 | KF188414_p101 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62112 | 62423 |
| AGR48954.1 | KF188414_p114 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 66789 | 67751 |
| AGR48925.1 | KF188414_p85 | Pnk | phrog_505 | polynucleotide kinase | other | 1 | 53440 | 54381 |
| AGR48958.1 | KF188414_p118 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 68231 | 68485 |
| AGR48953.1 | KF188414_p113 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 66539 | 66781 |
| AGR48853.1 | KF188414_p13 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9487 | 9678 |
| AGR48969.1 | KF188414_p129 | hypothetical protein | phrog_8201 | unknown function | unknown function | -1 | 71227 | 71301 |
| AGR48843.1 | KF188414_p3 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| AGR48874.1 | KF188414_p34 | lysin B | phrog_102 | endolysin | lysis | 1 | 31850 | 32707 |
| AGR48955.1 | KF188414_p115 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 67748 | 67885 |
| AGR48873.1 | KF188414_p33 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31515 | 31853 |
| AGR48849.1 | KF188414_p9 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4978 | 5199 |
| AGR48957.1 | KF188414_p117 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 68038 | 68250 |
| AGR48889.1 | KF188414_p49 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37804 | 38106 |
| AGR48961.1 | KF188414_p121 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 69043 | 69243 |
| AGR48937.1 | KF188414_p97 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60224 | 60664 |
| AGR48935.1 | KF188414_p95 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58508 | 59014 |
| AGR48894.1 | KF188414_p54 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41119 | 41217 |
| AGR48886.1 | KF188414_p46 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36742 | 36957 |
| AGR48904.1 | KF188414_p64 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44540 | 45508 |
| AGR48845.1 | KF188414_p5 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |