| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KJ567045 |
Definition |
Mycobacterium phage Emerson, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
PVOG |
Length |
60310 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
66.59 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AID59175.1 | KJ567045_p75 | peptidase | phrog_908 | unknown function | unknown function | 1 | 49203 | 50309 |
| AID59179.1 | KJ567045_p79 | hypothetical protein | phrog_2974 | unknown function | unknown function | 1 | 51474 | 51749 |
| AID59162.1 | KJ567045_p62 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 42152 | 42385 |
| AID59101.1 | KJ567045_p1 | hypothetical protein | phrog_4624 | unknown function | unknown function | 1 | 79 | 297 |
| AID59131.1 | KJ567045_p31 | holin | phrog_565 | holin | lysis | 1 | 27337 | 27777 |
| AID59110.1 | KJ567045_p10 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 7094 | 7279 |
| AID59167.1 | KJ567045_p67 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43939 | 44181 |
| AID59169.1 | KJ567045_p69 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44414 | 44785 |
| AID59102.1 | KJ567045_p2 | hypothetical protein | phrog_5284 | unknown function | unknown function | 1 | 297 | 479 |
| AID59106.1 | KJ567045_p6 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1382 | 1609 |
| AID59134.1 | KJ567045_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 28353 | 29561 |
| AID59187.1 | KJ567045_p87 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55322 | 55720 |
| AID59116.1 | KJ567045_p16 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9979 | 10404 |
| AID59122.1 | KJ567045_p22 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17148 | 18914 |
| AID59196.1 | KJ567045_p96 | hypothetical protein | phrog_4560 | unknown function | unknown function | 1 | 58900 | 59169 |
| AID59161.1 | KJ567045_p61 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41277 | 42155 |
| AID59180.1 | KJ567045_p80 | hypothetical protein | phrog_5776 | unknown function | unknown function | 1 | 51846 | 51974 |
| AID59117.1 | KJ567045_p17 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 10504 | 11115 |
| AID59159.1 | KJ567045_p59 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40835 | 41119 |
| AID59130.1 | KJ567045_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 26454 | 27326 |
| AID59124.1 | KJ567045_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 19474 | 20556 |
| AID59173.1 | KJ567045_p73 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 48545 | 49006 |
| AID59139.1 | KJ567045_p39 | hypothetical protein | phrog_7081 | unknown function | unknown function | 1 | 31338 | 31736 |
| AID59143.1 | KJ567045_p43 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34592 | 34972 |
| AID59142.1 | KJ567045_p42 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33663 | 34457 |
| AID59141.1 | KJ567045_p41 | intergrase | phrog_1 | integrase | integration and excision | 1 | 32470 | 33558 |
| AID59153.1 | KJ567045_p53 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38765 | 39115 |
| AID59125.1 | KJ567045_p25 | minor tail protein | phrog_1736 | minor tail protein | tail | 1 | 20563 | 20871 |
| AID59136.1 | KJ567045_p36 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29754 | 30185 |
| AID59157.1 | KJ567045_p57 | DnaQ | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39982 | 40536 |
| AID59155.1 | KJ567045_p55 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39496 | 39774 |
| AID59182.1 | KJ567045_p82 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 52849 | 53325 |
| AID59151.1 | KJ567045_p51 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 37607 | 38551 |
| AID59149.1 | KJ567045_p49 | WhiB | phrog_2286 | unknown function | unknown function | 1 | 36559 | 37350 |
| AID59133.1 | KJ567045_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 28115 | 28366 |
| AID59138.1 | KJ567045_p38 | hypothetical protein | phrog_2433 | unknown function | unknown function | 1 | 30536 | 31222 |
| AID59190.1 | KJ567045_p90 | hypothetical protein | phrog_980 | unknown function | unknown function | 1 | 56890 | 57219 |
| AID59194.1 | KJ567045_p94 | hypothetical protein | phrog_5243 | unknown function | unknown function | 1 | 58198 | 58416 |
| AID59107.1 | KJ567045_p7 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1593 | 3017 |
| AID59156.1 | KJ567045_p56 | hypothetical protein | phrog_4832 | unknown function | unknown function | 1 | 39771 | 39971 |
| AID59128.1 | KJ567045_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24413 | 24784 |
| AID59195.1 | KJ567045_p95 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 58537 | 58752 |
| AID59172.1 | KJ567045_p72 | RusA | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47854 | 48552 |
| AID59193.1 | KJ567045_p93 | hypothetical protein | phrog_5812 | unknown function | unknown function | 1 | 57555 | 58184 |
| AID59114.1 | KJ567045_p14 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 9364 | 9720 |
| AID59119.1 | KJ567045_p19 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 11229 | 11666 |
| AID59147.1 | KJ567045_p47 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 36186 | 36353 |
| AID59185.1 | KJ567045_p85 | hypothetical protein | phrog_6426 | unknown function | unknown function | 1 | 53872 | 54024 |
| AID59177.1 | KJ567045_p77 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50552 | 50824 |
| AID59105.1 | KJ567045_p5 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 1186 | 1389 |
| AID59127.1 | KJ567045_p27 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 23316 | 24329 |
| AID59132.1 | KJ567045_p32 | hypothetical protein | phrog_3413 | unknown function | unknown function | 1 | 27774 | 28118 |
| AID59109.1 | KJ567045_p9 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4587 | 7097 |
| AID59129.1 | KJ567045_p29 | lysin A | phrog_1519 | endolysin | lysis | 1 | 24802 | 26457 |
| AID59192.1 | KJ567045_p92 | hypothetical protein | phrog_33361 | unknown function | unknown function | 1 | 57429 | 57554 |
| AID59183.1 | KJ567045_p83 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 53319 | 53684 |
| AID59120.1 | KJ567045_p20 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 12076 | 15909 |
| AID59199.1 | KJ567045_p99 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 59818 | 59952 |
| AID59178.1 | KJ567045_p78 | SprT | phrog_1006 | unknown function | unknown function | 1 | 50897 | 51358 |
| AID59146.1 | KJ567045_p46 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 35657 | 36007 |
| AID59115.1 | KJ567045_p15 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9701 | 9982 |
| AID59121.1 | KJ567045_p21 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16011 | 17147 |
| AID59184.1 | KJ567045_p84 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53678 | 53875 |
| AID59191.1 | KJ567045_p91 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 57216 | 57383 |
| AID59126.1 | KJ567045_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 20872 | 23304 |
| AID59104.1 | KJ567045_p4 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 727 | 960 |
| AID59160.1 | KJ567045_p60 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 41122 | 41280 |
| AID59189.1 | KJ567045_p89 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56324 | 56893 |
| AID59123.1 | KJ567045_p23 | minor tail protein | phrog_1697 | minor tail protein | tail | 1 | 18914 | 19390 |
| AID59197.1 | KJ567045_p97 | hypothetical protein | phrog_13379 | unknown function | unknown function | 1 | 59206 | 59562 |
| AID59154.1 | KJ567045_p54 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39112 | 39495 |
| AID59166.1 | KJ567045_p66 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 43328 | 43837 |
| AID59174.1 | KJ567045_p74 | hypothetical protein | phrog_6689 | unknown function | unknown function | 1 | 49003 | 49206 |
| AID59144.1 | KJ567045_p44 | Cro | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 35135 | 35392 |
| AID59148.1 | KJ567045_p48 | hypothetical protein | phrog_3903 | unknown function | unknown function | 1 | 36350 | 36562 |
| AID59165.1 | KJ567045_p65 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 43124 | 43246 |
| AID59181.1 | KJ567045_p81 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 51971 | 52852 |
| AID59164.1 | KJ567045_p64 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42909 | 43127 |
| AID59163.1 | KJ567045_p63 | hypothetical protein | phrog_9435 | unknown function | unknown function | 1 | 42439 | 42912 |
| AID59111.1 | KJ567045_p11 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 7316 | 7858 |
| AID59145.1 | KJ567045_p45 | excise | phrog_1840 | excisionase | integration and excision | 1 | 35389 | 35655 |
| AID59188.1 | KJ567045_p88 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 55720 | 56331 |
| AID59135.1 | KJ567045_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29683 | 29757 |
| AID59113.1 | KJ567045_p13 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8981 | 9367 |
| AID59168.1 | KJ567045_p68 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 44178 | 44417 |
| AID59150.1 | KJ567045_p50 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 37347 | 37610 |
| AID59152.1 | KJ567045_p52 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 38563 | 38733 |
| AID59171.1 | KJ567045_p71 | hypothetical protein | phrog_7662 | unknown function | unknown function | 1 | 47445 | 47801 |
| AID59170.1 | KJ567045_p70 | primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44827 | 47445 |
| AID59118.1 | KJ567045_p18 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 11229 | 12076 |
| AID59200.1 | KJ567045_p100 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59949 | 60251 |
| AID59158.1 | KJ567045_p58 | hypothetical protein | phrog_2596 | unknown function | unknown function | 1 | 40536 | 40802 |
| AID59103.1 | KJ567045_p3 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 476 | 730 |
| AID59186.1 | KJ567045_p86 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54135 | 55322 |
| AID59176.1 | KJ567045_p76 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 50322 | 50555 |
| AID59198.1 | KJ567045_p98 | hypothetical protein | phrog_4561 | unknown function | unknown function | 1 | 59543 | 59773 |
| AID59140.1 | KJ567045_p40 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 31810 | 32112 |
| AID59137.1 | KJ567045_p37 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 30170 | 30460 |
| AID59112.1 | KJ567045_p12 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7934 | 8869 |
| AID59108.1 | KJ567045_p8 | portal | phrog_104 | portal protein | head and packaging | 1 | 3029 | 4582 |