| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KJ617393 |
Definition |
Streptococcus phage SOCP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Picovirinae; Cepunavirus; Streptococcus virus Cp1; Streptococcus phage Cp1. |
DB of origin |
PVOG |
Length |
19347 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
27 |
%GC |
38.82 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AID18048.1 | KJ617393_p5 | DNA polymerase | singleton | unknown function | unknown function | 1 | 2040 | 2609 |
| AID18067.1 | KJ617393_p26 | hypothetical protein | phrog_27339 | unknown function | unknown function | -1 | 18424 | 18693 |
| AID18044.1 | KJ617393_p1 | hypothetical protein | phrog_22499 | unknown function | unknown function | 1 | 376 | 642 |
| AID18050.1 | KJ617393_p7 | hypothetical protein | phrog_26305 | unknown function | unknown function | 1 | 3702 | 4148 |
| AID18070.1 | KJ617393_p25 | hypothetical protein | phrog_29520 | unknown function | unknown function | -1 | 18148 | 18423 |
| AID18061.1 | KJ617393_p18 | tail protein | phrog_30532 | tail protein | tail | 1 | 11515 | 13077 |
| AID18047.1 | KJ617393_p4 | terminal protein | phrog_26145 | unknown function | unknown function | 1 | 1351 | 2043 |
| AID18049.1 | KJ617393_p6 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2681 | 3745 |
| AID18045.1 | KJ617393_p2 | hypothetical protein | phrog_24156 | unknown function | unknown function | 1 | 657 | 947 |
| AID18051.1 | KJ617393_p8 | hypothetical protein | phrog_22891 | unknown function | unknown function | 1 | 4141 | 4653 |
| AID18060.1 | KJ617393_p17 | hypothetical protein | phrog_15030 | unknown function | unknown function | 1 | 10787 | 11548 |
| AID18046.1 | KJ617393_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1074 | 1346 |
| AID18066.1 | KJ617393_p24 | hypothetical protein | phrog_1027 | unknown function | unknown function | -1 | 17901 | 18143 |
| AID18053.1 | KJ617393_p10 | major capsid protein | phrog_2006 | major head protein | head and packaging | 1 | 5409 | 6506 |
| AID18056.1 | KJ617393_p13 | hypothetical protein | phrog_27791 | unknown function | unknown function | 1 | 8223 | 8807 |
| AID18054.1 | KJ617393_p11 | connector protein | phrog_2038 | upper collar connector | connector | 1 | 6563 | 7576 |
| AID18055.1 | KJ617393_p12 | collar protein | phrog_26520 | lower collar | tail | 1 | 7563 | 8210 |
| AID18069.1 | KJ617393_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17480 | 17896 |
| AID18065.1 | KJ617393_p22 | endolysin | phrog_6745 | endolysin | lysis | 1 | 16433 | 17452 |
| AID18059.1 | KJ617393_p16 | hypothetical protein | phrog_17155 | unknown function | unknown function | 1 | 10011 | 10787 |
| AID18058.1 | KJ617393_p15 | hypothetical protein | phrog_35592 | unknown function | unknown function | 1 | 9102 | 9989 |
| AID18064.1 | KJ617393_p21 | holin | phrog_199 | holin | lysis | 1 | 16029 | 16433 |
| AID18068.1 | KJ617393_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18704 | 18973 |
| AID18063.1 | KJ617393_p20 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 14993 | 16039 |
| AID18057.1 | KJ617393_p14 | hypothetical protein | phrog_23584 | unknown function | unknown function | 1 | 8804 | 9118 |
| AID18062.1 | KJ617393_p19 | tail protein | phrog_2248 | tail protein | tail | 1 | 13081 | 14919 |
| AID18052.1 | KJ617393_p9 | scaffolding protein | phrog_25389 | unknown function | unknown function | 1 | 4875 | 5165 |