| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KJ936628 |
Definition |
Vibrio phage VPp1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
PVOG |
Length |
50431 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
67 |
%GC |
41.34 |
Number of singletons |
6 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AII27506.1 | KJ936628_p27 | hypothetical protein | phrog_32701 | unknown function | unknown function | -1 | 23972 | 24118 |
| AII27518.1 | KJ936628_p41 | hypothetical protein | phrog_33104 | unknown function | unknown function | 1 | 32892 | 33086 |
| AII27537.1 | KJ936628_p61 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 44573 | 45295 |
| AII27500.1 | KJ936628_p21 | tail fiber protein | phrog_5795 | tail protein | tail | -1 | 17400 | 18062 |
| AII27502.1 | KJ936628_p23 | particle protein | phrog_2941 | virion structural protein | head and packaging | -1 | 20762 | 21466 |
| AII27496.1 | KJ936628_p17 | particle protein | phrog_7477 | unknown function | unknown function | -1 | 12962 | 13591 |
| AII27498.1 | KJ936628_p19 | hypothetical protein | phrog_22201 | tail fiber protein | tail | -1 | 14125 | 15726 |
| AII27536.1 | KJ936628_p60 | hypothetical protein | phrog_10946 | unknown function | unknown function | 1 | 44073 | 44573 |
| AII27528.1 | KJ936628_p51 | amidoligase | phrog_7469 | amidoligase enzyme | other | 1 | 40052 | 40897 |
| AII27501.1 | KJ936628_p22 | tail tubular protein | singleton | unknown function | unknown function | -1 | 18344 | 20758 |
| AII27523.1 | KJ936628_p46 | hypothetical protein | phrog_7218 | glutamine amidotransferase | moron, auxiliary metabolic gene and host takeover | 1 | 35757 | 36449 |
| AII27494.1 | KJ936628_p15 | hypothetical protein | phrog_32225 | unknown function | unknown function | -1 | 11089 | 12294 |
| AII27507.1 | KJ936628_p28 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 24135 | 26276 |
| AII27540.1 | KJ936628_p64 | hypothetical protein | phrog_36824 | unknown function | unknown function | 1 | 46176 | 46316 |
| AII27531.2 | KJ936628_p54 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42174 | 42587 |
| AII27530.1 | KJ936628_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41887 | 42066 |
| AII27487.1 | KJ936628_p8 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 5914 | 6426 |
| AII27529.1 | KJ936628_p52 | ATP-grasp enzyme | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 40911 | 41933 |
| AII27504.1 | KJ936628_p25 | major head protein | phrog_1328 | major head protein | head and packaging | -1 | 21837 | 22880 |
| AII27491.1 | KJ936628_p12 | hypothetical protein | phrog_37943 | unknown function | unknown function | 1 | 7829 | 8053 |
| AII27512.1 | KJ936628_p34 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 29152 | 29568 |
| AII27510.1 | KJ936628_p31 | hypothetical protein | phrog_37252 | unknown function | unknown function | -1 | 28088 | 28222 |
| AII27542.1 | KJ936628_p66 | hypothetical protein | phrog_30966 | unknown function | unknown function | 1 | 48045 | 48491 |
| AQS78997.1 | KJ936628_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 573 | 713 |
| AII27538.1 | KJ936628_p62 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 45309 | 46058 |
| AQS78999.1 | KJ936628_p39 | hypothetical protein | phrog_38377 | unknown function | unknown function | 1 | 32431 | 32568 |
| AII27533.1 | KJ936628_p56 | hypothetical protein | phrog_32953 | unknown function | unknown function | 1 | 42834 | 43073 |
| AII27495.1 | KJ936628_p16 | hypothetical protein | phrog_33148 | unknown function | unknown function | -1 | 12294 | 12962 |
| AII27534.1 | KJ936628_p57 | phosphoribosyl-ATP diphosphatase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 43084 | 43530 |
| AII27514.1 | KJ936628_p36 | hypothetical protein | phrog_33973 | unknown function | unknown function | 1 | 31520 | 31726 |
| AII27527.1 | KJ936628_p50 | hypothetical protein | phrog_11055 | unknown function | unknown function | 1 | 39459 | 40055 |
| AII27493.1 | KJ936628_p14 | particle protein | phrog_6958 | virion structural protein | head and packaging | -1 | 8296 | 11079 |
| AII27489.1 | KJ936628_p10 | HNH endonuclease | phrog_2255 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6677 | 7090 |
| AII27539.1 | KJ936628_p63 | hypothetical protein | phrog_38474 | unknown function | unknown function | 1 | 46061 | 46186 |
| AII27532.1 | KJ936628_p55 | hypothetical protein | phrog_29178 | unknown function | unknown function | 1 | 42550 | 42831 |
| AII27481.1 | KJ936628_p1 | endonuclease VII | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 6 | 401 |
| AII27522.1 | KJ936628_p45 | hypothetical protein | phrog_38092 | unknown function | unknown function | 1 | 34271 | 35755 |
| AII27492.1 | KJ936628_p13 | hypothetical protein | phrog_28686 | unknown function | unknown function | -1 | 8100 | 8285 |
| AII27513.2 | KJ936628_p35 | hypothetical protein | phrog_33675 | unknown function | unknown function | -1 | 29990 | 30277 |
| AII27517.1 | KJ936628_p40 | hypothetical protein | phrog_980 | unknown function | unknown function | 1 | 32565 | 32882 |
| AII27525.1 | KJ936628_p48 | glutamine amidotransferase | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | 1 | 37382 | 38572 |
| AII27485.1 | KJ936628_p6 | ribonucleotide-diphosphate reductase subunit alpha | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 2720 | 4816 |
| AII27543.1 | KJ936628_p67 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 48491 | 50428 |
| AII27524.1 | KJ936628_p47 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36768 | 37178 |
| AII27483.1 | KJ936628_p4 | hypothetical protein | phrog_6599 | unknown function | unknown function | 1 | 749 | 1510 |
| AII27505.1 | KJ936628_p26 | non-structrual protein | phrog_3927 | head scaffolding protein | head and packaging | -1 | 22896 | 23966 |
| AII27503.1 | KJ936628_p24 | hypothetical protein | phrog_3982 | unknown function | unknown function | -1 | 21470 | 21775 |
| AII27490.2 | KJ936628_p11 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7071 | 7496 |
| AII27488.1 | KJ936628_p9 | hypothetical protein | phrog_29064 | unknown function | unknown function | 1 | 6438 | 6677 |
| AII27515.1 | KJ936628_p37 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 31737 | 32243 |
| AII27516.1 | KJ936628_p38 | hypothetical protein | phrog_38361 | unknown function | unknown function | 1 | 32246 | 32434 |
| AII27511.1 | KJ936628_p33 | lysin | phrog_31077 | endolysin | lysis | -1 | 28388 | 29152 |
| AII27482.1 | KJ936628_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 401 | 580 |
| AQS78998.1 | KJ936628_p32 | hypothetical protein | phrog_1076 | FmdB-like transcriptional regulator | transcription regulation | -1 | 28185 | 28391 |
| AII27521.1 | KJ936628_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34022 | 34153 |
| AQS79000.1 | KJ936628_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43879 | 44073 |
| AII27519.2 | KJ936628_p42 | hypothetical protein | phrog_31821 | unknown function | unknown function | 1 | 33095 | 33271 |
| AII27484.1 | KJ936628_p5 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 1882 | 2730 |
| AII27499.1 | KJ936628_p20 | constituent protein | phrog_3287 | virion structural protein | head and packaging | -1 | 15726 | 17390 |
| AII27526.1 | KJ936628_p49 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | 1 | 38599 | 39447 |
| AII27535.1 | KJ936628_p58 | hypothetical protein | phrog_29993 | unknown function | unknown function | 1 | 43523 | 43879 |
| AII27508.1 | KJ936628_p29 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 26276 | 27706 |
| AII27486.1 | KJ936628_p7 | ribonucleotide-diphosphate reductase subunit beta | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | 1 | 4816 | 5892 |
| AII27509.1 | KJ936628_p30 | hypothetical protein | phrog_30314 | unknown function | unknown function | -1 | 27726 | 28088 |
| AII27541.1 | KJ936628_p65 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 46327 | 48027 |
| AII27497.1 | KJ936628_p18 | hypothetical protein | phrog_33295 | unknown function | unknown function | -1 | 13591 | 13980 |
| AII27520.1 | KJ936628_p43 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | 1 | 33547 | 34020 |