Genomic map of Vibrio phage VPp1 (KJ936628)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KJ936628
Definition
Vibrio phage VPp1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
PVOG
Length
50431
Host Name
Vibrio parahaemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
41.34
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AII27506.1 KJ936628_p27 hypothetical protein phrog_32701 unknown function unknown function -1 23972 24118
AII27518.1 KJ936628_p41 hypothetical protein phrog_33104 unknown function unknown function 1 32892 33086
AII27537.1 KJ936628_p61 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 44573 45295
AII27500.1 KJ936628_p21 tail fiber protein phrog_5795 tail protein tail -1 17400 18062
AII27502.1 KJ936628_p23 particle protein phrog_2941 virion structural protein head and packaging -1 20762 21466
AII27496.1 KJ936628_p17 particle protein phrog_7477 unknown function unknown function -1 12962 13591
AII27498.1 KJ936628_p19 hypothetical protein phrog_22201 tail fiber protein tail -1 14125 15726
AII27536.1 KJ936628_p60 hypothetical protein phrog_10946 unknown function unknown function 1 44073 44573
AII27528.1 KJ936628_p51 amidoligase phrog_7469 amidoligase enzyme other 1 40052 40897
AII27501.1 KJ936628_p22 tail tubular protein singleton unknown function unknown function -1 18344 20758
AII27523.1 KJ936628_p46 hypothetical protein phrog_7218 glutamine amidotransferase moron, auxiliary metabolic gene and host takeover 1 35757 36449
AII27494.1 KJ936628_p15 hypothetical protein phrog_32225 unknown function unknown function -1 11089 12294
AII27507.1 KJ936628_p28 portal protein phrog_1216 portal protein head and packaging -1 24135 26276
AII27540.1 KJ936628_p64 hypothetical protein phrog_36824 unknown function unknown function 1 46176 46316
AII27531.2 KJ936628_p54 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42174 42587
AII27530.1 KJ936628_p53 hypothetical protein singleton unknown function unknown function 1 41887 42066
AII27487.1 KJ936628_p8 hypothetical protein phrog_335 phosphatase other 1 5914 6426
AII27529.1 KJ936628_p52 ATP-grasp enzyme phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover 1 40911 41933
AII27504.1 KJ936628_p25 major head protein phrog_1328 major head protein head and packaging -1 21837 22880
AII27491.1 KJ936628_p12 hypothetical protein phrog_37943 unknown function unknown function 1 7829 8053
AII27512.1 KJ936628_p34 terminase small subunit phrog_51 terminase small subunit head and packaging -1 29152 29568
AII27510.1 KJ936628_p31 hypothetical protein phrog_37252 unknown function unknown function -1 28088 28222
AII27542.1 KJ936628_p66 hypothetical protein phrog_30966 unknown function unknown function 1 48045 48491
AQS78997.1 KJ936628_p3 hypothetical protein singleton unknown function unknown function 1 573 713
AII27538.1 KJ936628_p62 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 45309 46058
AQS78999.1 KJ936628_p39 hypothetical protein phrog_38377 unknown function unknown function 1 32431 32568
AII27533.1 KJ936628_p56 hypothetical protein phrog_32953 unknown function unknown function 1 42834 43073
AII27495.1 KJ936628_p16 hypothetical protein phrog_33148 unknown function unknown function -1 12294 12962
AII27534.1 KJ936628_p57 phosphoribosyl-ATP diphosphatase phrog_671 nucleotide pyrophosphohydrolase other 1 43084 43530
AII27514.1 KJ936628_p36 hypothetical protein phrog_33973 unknown function unknown function 1 31520 31726
AII27527.1 KJ936628_p50 hypothetical protein phrog_11055 unknown function unknown function 1 39459 40055
AII27493.1 KJ936628_p14 particle protein phrog_6958 virion structural protein head and packaging -1 8296 11079
AII27489.1 KJ936628_p10 HNH endonuclease phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6677 7090
AII27539.1 KJ936628_p63 hypothetical protein phrog_38474 unknown function unknown function 1 46061 46186
AII27532.1 KJ936628_p55 hypothetical protein phrog_29178 unknown function unknown function 1 42550 42831
AII27481.1 KJ936628_p1 endonuclease VII phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 6 401
AII27522.1 KJ936628_p45 hypothetical protein phrog_38092 unknown function unknown function 1 34271 35755
AII27492.1 KJ936628_p13 hypothetical protein phrog_28686 unknown function unknown function -1 8100 8285
AII27513.2 KJ936628_p35 hypothetical protein phrog_33675 unknown function unknown function -1 29990 30277
AII27517.1 KJ936628_p40 hypothetical protein phrog_980 unknown function unknown function 1 32565 32882
AII27525.1 KJ936628_p48 glutamine amidotransferase phrog_4736 L-glutamine-D-fructose-6-phosphate aminotransferase other 1 37382 38572
AII27485.1 KJ936628_p6 ribonucleotide-diphosphate reductase subunit alpha phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 2720 4816
AII27543.1 KJ936628_p67 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 48491 50428
AII27524.1 KJ936628_p47 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36768 37178
AII27483.1 KJ936628_p4 hypothetical protein phrog_6599 unknown function unknown function 1 749 1510
AII27505.1 KJ936628_p26 non-structrual protein phrog_3927 head scaffolding protein head and packaging -1 22896 23966
AII27503.1 KJ936628_p24 hypothetical protein phrog_3982 unknown function unknown function -1 21470 21775
AII27490.2 KJ936628_p11 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 7071 7496
AII27488.1 KJ936628_p9 hypothetical protein phrog_29064 unknown function unknown function 1 6438 6677
AII27515.1 KJ936628_p37 hypothetical protein phrog_1448 unknown function unknown function 1 31737 32243
AII27516.1 KJ936628_p38 hypothetical protein phrog_38361 unknown function unknown function 1 32246 32434
AII27511.1 KJ936628_p33 lysin phrog_31077 endolysin lysis -1 28388 29152
AII27482.1 KJ936628_p2 hypothetical protein singleton unknown function unknown function 1 401 580
AQS78998.1 KJ936628_p32 hypothetical protein phrog_1076 FmdB-like transcriptional regulator transcription regulation -1 28185 28391
AII27521.1 KJ936628_p44 hypothetical protein singleton unknown function unknown function 1 34022 34153
AQS79000.1 KJ936628_p59 hypothetical protein singleton unknown function unknown function 1 43879 44073
AII27519.2 KJ936628_p42 hypothetical protein phrog_31821 unknown function unknown function 1 33095 33271
AII27484.1 KJ936628_p5 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 1882 2730
AII27499.1 KJ936628_p20 constituent protein phrog_3287 virion structural protein head and packaging -1 15726 17390
AII27526.1 KJ936628_p49 hypothetical protein phrog_3815 COOH.NH2 ligase other 1 38599 39447
AII27535.1 KJ936628_p58 hypothetical protein phrog_29993 unknown function unknown function 1 43523 43879
AII27508.1 KJ936628_p29 terminase large subunit phrog_2 terminase large subunit head and packaging -1 26276 27706
AII27486.1 KJ936628_p7 ribonucleotide-diphosphate reductase subunit beta phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 4816 5892
AII27509.1 KJ936628_p30 hypothetical protein phrog_30314 unknown function unknown function -1 27726 28088
AII27541.1 KJ936628_p65 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 46327 48027
AII27497.1 KJ936628_p18 hypothetical protein phrog_33295 unknown function unknown function -1 13591 13980
AII27520.1 KJ936628_p43 hypothetical protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover 1 33547 34020