Genomic map of Cronobacter phage vB_CsaP_Ss1 (KM058087)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KM058087
Definition
Cronobacter phage vB_CsaP_Ss1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
PVOG
Length
42205
Host Name
Cronobacter sakazakii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
46.06
Number of singletons
26
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AIK67506.1 KM058087_p2 hypothetical protein singleton unknown function unknown function -1 798 932
AIK67558.1 KM058087_p54 hypothetical protein singleton unknown function unknown function -1 40716 40976
AIK67507.1 KM058087_p3 hypothetical protein singleton unknown function unknown function 1 1471 1839
AIK67525.1 KM058087_p21 hypothetical protein singleton unknown function unknown function 1 17058 17348
AIK67513.1 KM058087_p9 hypothetical protein phrog_3982 unknown function unknown function 1 7864 8241
AIK67546.1 KM058087_p42 hypothetical protein singleton unknown function unknown function -1 34768 35055
AIK67519.1 KM058087_p15 hypothetical protein singleton unknown function unknown function 1 13170 13376
AIK67550.1 KM058087_p46 hypothetical protein phrog_13997 unknown function unknown function -1 38272 38559
AIK67527.1 KM058087_p23 hypothetical protein singleton unknown function unknown function 1 18437 20461
AIK67510.1 KM058087_p6 hypothetical protein singleton unknown function unknown function 1 5420 5683
AIK67524.1 KM058087_p20 hypothetical protein singleton unknown function unknown function 1 16212 17054
AIK67528.1 KM058087_p24 hypothetical protein singleton unknown function unknown function 1 20461 20757
AIK67555.1 KM058087_p51 hypothetical protein phrog_11217 unknown function unknown function -1 39838 40185
AIK67557.1 KM058087_p53 hypothetical protein singleton unknown function unknown function -1 40607 40732
AIK67505.1 KM058087_p1 hypothetical protein singleton unknown function unknown function -1 100 723
AIK67518.1 KM058087_p14 hypothetical protein phrog_402 unknown function unknown function 1 12989 13204
AIK67511.1 KM058087_p7 scaffolding protein phrog_3927 head scaffolding protein head and packaging 1 5687 6793
AIK67537.1 KM058087_p33 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 27804 28520
AIK67535.1 KM058087_p31 hypothetical protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism -1 26655 27101
AIK67547.1 KM058087_p43 hypothetical protein phrog_2480 unknown function unknown function -1 35097 35489
AIK67517.1 KM058087_p13 cell wall hydrolase singleton unknown function unknown function -1 12747 12944
AIK67521.1 KM058087_p17 hypothetical protein phrog_3287 virion structural protein head and packaging 1 14049 15620
AIK67561.1 KM058087_p57 hypothetical protein singleton unknown function unknown function -1 41528 41929
AIK67539.1 KM058087_p35 hypothetical protein singleton unknown function unknown function -1 29481 30110
AIK67556.1 KM058087_p52 hypothetical protein phrog_10455 unknown function unknown function -1 40253 40522
AIK67549.1 KM058087_p45 hypothetical protein singleton unknown function unknown function -1 35894 38158
AIK67542.1 KM058087_p38 hypothetical protein phrog_1990 Cas4-domain exonuclease DNA, RNA and nucleotide metabolism -1 32162 33013
AIK67540.1 KM058087_p36 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30176 30604
AIK67536.1 KM058087_p32 hypothetical protein singleton unknown function unknown function -1 27131 27811
AIK67544.1 KM058087_p40 hypothetical protein phrog_2300 unknown function unknown function -1 33527 33973
AIK67538.1 KM058087_p34 hypothetical protein phrog_4828 unknown function unknown function -1 28517 29419
AIK67541.1 KM058087_p37 ATP dependent RNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 30604 32172
AIK67523.1 KM058087_p19 hypothetical protein singleton unknown function unknown function 1 15793 16212
AIK67508.1 KM058087_p4 terminase phrog_2 terminase large subunit head and packaging 1 1836 3263
AIK67516.1 KM058087_p12 tail protein phrog_2871 tail protein tail 1 9929 12700
AIK67532.1 KM058087_p28 hypothetical protein phrog_229 MazG-like pyrophosphatase other -1 22942 23301
AIK67515.1 KM058087_p11 hypothetical protein singleton unknown function unknown function 1 8881 9936
AIK67514.1 KM058087_p10 hypothetical protein phrog_2941 virion structural protein head and packaging 1 8243 8881
AIK67534.1 KM058087_p30 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 26093 26662
AIK67522.1 KM058087_p18 hypothetical protein singleton unknown function unknown function 1 15617 15796
AIK67559.1 KM058087_p55 hypothetical protein phrog_8779 unknown function unknown function -1 40973 41350
AIK67530.1 KM058087_p26 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 21373 22509
AIK67543.1 KM058087_p39 endolysin phrog_465 endolysin lysis -1 33065 33472
AIK67509.1 KM058087_p5 portal protein phrog_1216 portal protein head and packaging 1 3263 5416
AIK67529.1 KM058087_p25 hypothetical protein singleton unknown function unknown function 1 20754 21341
AIK67512.1 KM058087_p8 major head protein phrog_1328 major head protein head and packaging 1 6806 7768
AIK67526.1 KM058087_p22 hypothetical protein singleton unknown function unknown function 1 17348 18436
AIK67551.1 KM058087_p47 hypothetical protein phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 38552 39031
AIK67533.1 KM058087_p29 DNA polymerase III alpha subunit phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 23301 26096
AIK67520.1 KM058087_p16 tail fiber protein phrog_6465 tail protein tail 1 13379 14038
AIK67553.1 KM058087_p49 hypothetical protein singleton unknown function unknown function -1 39290 39574
AIK67554.1 KM058087_p50 hypothetical protein singleton unknown function unknown function -1 39620 39811
AIK67548.1 KM058087_p44 holliday junction resolvase phrog_34 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 35493 35897
AIK67552.1 KM058087_p48 hypothetical protein singleton unknown function unknown function -1 39031 39297
AIK67560.1 KM058087_p56 hypothetical protein singleton unknown function unknown function -1 41350 41535
AIK67545.1 KM058087_p41 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 34053 34778
AIK67531.1 KM058087_p27 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22509 22952