| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KM058087 |
Definition |
Cronobacter phage vB_CsaP_Ss1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
PVOG |
Length |
42205 |
Host Name |
Cronobacter sakazakii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
46.06 |
Number of singletons |
26 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AIK67506.1 | KM058087_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 798 | 932 |
| AIK67558.1 | KM058087_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40716 | 40976 |
| AIK67507.1 | KM058087_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1471 | 1839 |
| AIK67525.1 | KM058087_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17058 | 17348 |
| AIK67513.1 | KM058087_p9 | hypothetical protein | phrog_3982 | unknown function | unknown function | 1 | 7864 | 8241 |
| AIK67546.1 | KM058087_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34768 | 35055 |
| AIK67519.1 | KM058087_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13170 | 13376 |
| AIK67550.1 | KM058087_p46 | hypothetical protein | phrog_13997 | unknown function | unknown function | -1 | 38272 | 38559 |
| AIK67527.1 | KM058087_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18437 | 20461 |
| AIK67510.1 | KM058087_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5420 | 5683 |
| AIK67524.1 | KM058087_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16212 | 17054 |
| AIK67528.1 | KM058087_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20461 | 20757 |
| AIK67555.1 | KM058087_p51 | hypothetical protein | phrog_11217 | unknown function | unknown function | -1 | 39838 | 40185 |
| AIK67557.1 | KM058087_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40607 | 40732 |
| AIK67505.1 | KM058087_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 100 | 723 |
| AIK67518.1 | KM058087_p14 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 12989 | 13204 |
| AIK67511.1 | KM058087_p7 | scaffolding protein | phrog_3927 | head scaffolding protein | head and packaging | 1 | 5687 | 6793 |
| AIK67537.1 | KM058087_p33 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 27804 | 28520 |
| AIK67535.1 | KM058087_p31 | hypothetical protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26655 | 27101 |
| AIK67547.1 | KM058087_p43 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 35097 | 35489 |
| AIK67517.1 | KM058087_p13 | cell wall hydrolase | singleton | unknown function | unknown function | -1 | 12747 | 12944 |
| AIK67521.1 | KM058087_p17 | hypothetical protein | phrog_3287 | virion structural protein | head and packaging | 1 | 14049 | 15620 |
| AIK67561.1 | KM058087_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41528 | 41929 |
| AIK67539.1 | KM058087_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29481 | 30110 |
| AIK67556.1 | KM058087_p52 | hypothetical protein | phrog_10455 | unknown function | unknown function | -1 | 40253 | 40522 |
| AIK67549.1 | KM058087_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35894 | 38158 |
| AIK67542.1 | KM058087_p38 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32162 | 33013 |
| AIK67540.1 | KM058087_p36 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 30176 | 30604 |
| AIK67536.1 | KM058087_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27131 | 27811 |
| AIK67544.1 | KM058087_p40 | hypothetical protein | phrog_2300 | unknown function | unknown function | -1 | 33527 | 33973 |
| AIK67538.1 | KM058087_p34 | hypothetical protein | phrog_4828 | unknown function | unknown function | -1 | 28517 | 29419 |
| AIK67541.1 | KM058087_p37 | ATP dependent RNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 30604 | 32172 |
| AIK67523.1 | KM058087_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15793 | 16212 |
| AIK67508.1 | KM058087_p4 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1836 | 3263 |
| AIK67516.1 | KM058087_p12 | tail protein | phrog_2871 | tail protein | tail | 1 | 9929 | 12700 |
| AIK67532.1 | KM058087_p28 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | -1 | 22942 | 23301 |
| AIK67515.1 | KM058087_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8881 | 9936 |
| AIK67514.1 | KM058087_p10 | hypothetical protein | phrog_2941 | virion structural protein | head and packaging | 1 | 8243 | 8881 |
| AIK67534.1 | KM058087_p30 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 26093 | 26662 |
| AIK67522.1 | KM058087_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15617 | 15796 |
| AIK67559.1 | KM058087_p55 | hypothetical protein | phrog_8779 | unknown function | unknown function | -1 | 40973 | 41350 |
| AIK67530.1 | KM058087_p26 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 21373 | 22509 |
| AIK67543.1 | KM058087_p39 | endolysin | phrog_465 | endolysin | lysis | -1 | 33065 | 33472 |
| AIK67509.1 | KM058087_p5 | portal protein | phrog_1216 | portal protein | head and packaging | 1 | 3263 | 5416 |
| AIK67529.1 | KM058087_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20754 | 21341 |
| AIK67512.1 | KM058087_p8 | major head protein | phrog_1328 | major head protein | head and packaging | 1 | 6806 | 7768 |
| AIK67526.1 | KM058087_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17348 | 18436 |
| AIK67551.1 | KM058087_p47 | hypothetical protein | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 38552 | 39031 |
| AIK67533.1 | KM058087_p29 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23301 | 26096 |
| AIK67520.1 | KM058087_p16 | tail fiber protein | phrog_6465 | tail protein | tail | 1 | 13379 | 14038 |
| AIK67553.1 | KM058087_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39290 | 39574 |
| AIK67554.1 | KM058087_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39620 | 39811 |
| AIK67548.1 | KM058087_p44 | holliday junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 35493 | 35897 |
| AIK67552.1 | KM058087_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39031 | 39297 |
| AIK67560.1 | KM058087_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41350 | 41535 |
| AIK67545.1 | KM058087_p41 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 34053 | 34778 |
| AIK67531.1 | KM058087_p27 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22509 | 22952 |