| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KM923970 |
Definition |
Mycobacterium phage Gomashi, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Liefievirus; unclassified Liefievirus. |
DB of origin |
PVOG |
Length |
41903 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
62 |
%GC |
66.59 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AJK27315.1 | KM923970_p47 | hypothetical protein | phrog_7826 | unknown function | unknown function | 1 | 35895 | 36140 |
| AJK27286.1 | KM923970_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 16650 | 18404 |
| AJK27276.1 | KM923970_p8 | hypothetical protein | phrog_3101 | unknown function | unknown function | 1 | 8076 | 8303 |
| AJK27308.1 | KM923970_p40 | hypothetical protein | phrog_7392 | unknown function | unknown function | 1 | 31425 | 31775 |
| AJK27298.1 | KM923970_p30 | hypothetical protein | phrog_1177 | unknown function | unknown function | 1 | 26791 | 27111 |
| AJK27283.1 | KM923970_p15 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10570 | 11079 |
| AJK27307.1 | KM923970_p39 | hypothetical protein | phrog_7486 | unknown function | unknown function | 1 | 31276 | 31425 |
| AJK27302.1 | KM923970_p34 | RDF protein | phrog_7506 | recombination directionality factor | integration and excision | 1 | 29499 | 29756 |
| AJK27320.1 | KM923970_p52 | hypothetical protein | phrog_9043 | unknown function | unknown function | 1 | 37609 | 38052 |
| AJK27275.1 | KM923970_p7 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7104 | 8039 |
| AJK27281.1 | KM923970_p13 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9855 | 10469 |
| AJK27306.1 | KM923970_p38 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 30929 | 31279 |
| AJK27289.1 | KM923970_p21 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 20009 | 20443 |
| AJK27319.1 | KM923970_p51 | hypothetical protein | phrog_13172 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37478 | 37612 |
| AJK27318.1 | KM923970_p50 | RuvC | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36915 | 37505 |
| AJK27282.1 | KM923970_p14 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10570 | 11465 |
| AJK27301.1 | KM923970_p33 | repressor | phrog_2328 | transcriptional repressor | transcription regulation | -1 | 28915 | 29400 |
| AJK27285.1 | KM923970_p17 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 15478 | 16650 |
| AJK27325.1 | KM923970_p57 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 39877 | 40248 |
| AJK27310.1 | KM923970_p42 | RecE | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31908 | 32993 |
| AJK27317.1 | KM923970_p49 | hypothetical protein | phrog_7576 | unknown function | unknown function | 1 | 36478 | 36918 |
| AJK27288.1 | KM923970_p20 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18862 | 19998 |
| AJK27295.1 | KM923970_p27 | lysin A | phrog_880 | endolysin | lysis | 1 | 23886 | 25202 |
| AJK27326.1 | KM923970_p58 | hypothetical protein | phrog_34211 | unknown function | unknown function | 1 | 40306 | 40395 |
| AJK27312.1 | KM923970_p44 | hypothetical protein | phrog_7227 | unknown function | unknown function | 1 | 34396 | 34950 |
| AJK27296.1 | KM923970_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 25202 | 26410 |
| AJK27273.1 | KM923970_p5 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 6190 | 6396 |
| AJK27305.1 | KM923970_p37 | hypothetical protein | phrog_10116 | unknown function | unknown function | 1 | 30750 | 30932 |
| AJK27327.1 | KM923970_p59 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40439 | 40762 |
| AJK27277.1 | KM923970_p9 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 8315 | 8812 |
| AJK27271.1 | KM923970_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1889 | 3403 |
| AJK27292.1 | KM923970_p24 | hypothetical protein | phrog_8923 | unknown function | unknown function | 1 | 23174 | 23356 |
| AJK27324.1 | KM923970_p56 | hypothetical protein | phrog_5436 | unknown function | unknown function | 1 | 38976 | 39767 |
| AJK27279.1 | KM923970_p11 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 9155 | 9418 |
| AJK27300.1 | KM923970_p32 | integrase | phrog_1 | integrase | integration and excision | -1 | 27722 | 28918 |
| AJK27269.1 | KM923970_p1 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 44 | 388 |
| AJK27280.1 | KM923970_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9415 | 9858 |
| AJK27293.1 | KM923970_p25 | hypothetical protein | phrog_9511 | unknown function | unknown function | 1 | 23356 | 23631 |
| AJK27321.1 | KM923970_p53 | hypothetical protein | phrog_10006 | unknown function | unknown function | 1 | 38049 | 38207 |
| AJK27309.1 | KM923970_p41 | hypothetical protein | phrog_6734 | unknown function | unknown function | 1 | 31759 | 31911 |
| AJK27314.1 | KM923970_p46 | hypothetical protein | phrog_15494 | unknown function | unknown function | 1 | 35518 | 35907 |
| AJK27323.1 | KM923970_p55 | hypothetical protein | phrog_11054 | unknown function | unknown function | 1 | 38689 | 38973 |
| AJK27272.1 | KM923970_p4 | protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3404 | 6193 |
| AJK27274.1 | KM923970_p6 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6515 | 7057 |
| AJK27304.1 | KM923970_p36 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 30151 | 30750 |
| AJK27291.1 | KM923970_p23 | hypothetical protein | phrog_7598 | unknown function | unknown function | 1 | 22851 | 23171 |
| AJK27311.1 | KM923970_p43 | RecT | phrog_4171 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32990 | 34399 |
| AJK27297.1 | KM923970_p29 | holin | phrog_7198 | holin | lysis | 1 | 26436 | 26786 |
| AJK27290.1 | KM923970_p22 | hypothetical protein | phrog_7565 | minor tail protein | tail | 1 | 20443 | 22836 |
| AJK27299.1 | KM923970_p31 | hypothetical protein | phrog_798 | unknown function | unknown function | 1 | 27108 | 27725 |
| AJK27294.1 | KM923970_p26 | hypothetical protein | phrog_8517 | unknown function | unknown function | 1 | 23631 | 23825 |
| AJK27287.1 | KM923970_p19 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18404 | 18865 |
| AJK27313.1 | KM923970_p45 | hypothetical protein | phrog_14897 | unknown function | unknown function | 1 | 35090 | 35521 |
| AJK27270.1 | KM923970_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 456 | 1892 |
| AJK27328.1 | KM923970_p60 | hypothetical protein | phrog_7328 | unknown function | unknown function | 1 | 40861 | 41103 |
| AJK27330.1 | KM923970_p62 | hypothetical protein | phrog_3468 | unknown function | unknown function | 1 | 41547 | 41768 |
| AJK27322.1 | KM923970_p54 | hypothetical protein | phrog_7600 | unknown function | unknown function | 1 | 38204 | 38632 |
| AJK27316.1 | KM923970_p48 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 36137 | 36481 |
| AJK27284.1 | KM923970_p16 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 11465 | 15478 |
| AJK27303.1 | KM923970_p35 | hypothetical protein | phrog_5081 | unknown function | unknown function | 1 | 29753 | 30151 |
| AJK27278.1 | KM923970_p10 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 8809 | 9168 |
| AJK27329.1 | KM923970_p61 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41127 | 41453 |