Genomic map of Clostridium phage phiCT19406A (KM983330)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KM983330
Definition
Clostridium phage phiCT19406A, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
PVOG
Length
47020
Host Name
Clostridium tetani
Host domain
Bacteria
Is prophage?
undef
Number of proteins
67
%GC
28.39
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AJA42719.1 KM983330_p29 hypothetical protein phrog_19778 unknown function unknown function 1 14528 15616
AJA42742.1 KM983330_p52 hypothetical protein phrog_6376 unknown function unknown function 1 31586 32146
AJA42716.1 KM983330_p26 hypothetical protein phrog_3928 unknown function unknown function 1 13280 13456
AJA42748.1 KM983330_p58 hypothetical protein phrog_15809 unknown function unknown function 1 37601 38683
AJA42745.1 KM983330_p55 hypothetical protein phrog_14012 unknown function unknown function 1 34425 36317
AJA42699.1 KM983330_p9 hypothetical protein phrog_15837 unknown function unknown function 1 4885 5019
AJA42730.1 KM983330_p40 hypothetical protein phrog_5133 unknown function unknown function 1 24177 24365
AJA42750.1 KM983330_p60 hypothetical protein phrog_21039 unknown function unknown function 1 39738 40472
AJA42700.1 KM983330_p10 hypothetical protein phrog_16982 unknown function unknown function 1 5174 5605
AJA42733.1 KM983330_p43 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 25037 25381
AJA42691.1 KM983330_p1 serine recombinase phrog_95 integrase integration and excision -1 37 1545
AJA42694.1 KM983330_p4 hypothetical protein phrog_87 metallo-protease other -1 2241 2699
AJA42746.1 KM983330_p56 hypothetical protein phrog_8907 unknown function unknown function 1 36322 36576
AJA42744.1 KM983330_p54 hypothetical protein phrog_9485 virion structural protein head and packaging 1 33177 34412
AJA42697.1 KM983330_p7 kilA anti-repressor protein phrog_130 anti-repressor Ant transcription regulation 1 3550 4353
AJA42747.1 KM983330_p57 hypothetical protein phrog_7317 unknown function unknown function 1 36592 37590
AJA42693.1 KM983330_p3 hypothetical protein phrog_5553 unknown function unknown function -1 1870 2214
AJA42705.1 KM983330_p15 hypothetical protein phrog_16121 unknown function unknown function 1 8923 9297
AJA42754.1 KM983330_p64 hypothetical protein phrog_17559 unknown function unknown function 1 43219 44271
AJA42757.1 KM983330_p67 DNA polymerase III subunit epsilon phrog_14632 DNA polymerase DNA, RNA and nucleotide metabolism 1 45739 46881
AJA42713.1 KM983330_p23 hypothetical protein phrog_17601 unknown function unknown function 1 12015 12215
AJA42734.1 KM983330_p44 hypothetical protein phrog_7585 unknown function unknown function 1 25386 25805
AJA42751.1 KM983330_p61 hemolysin XhlA phrog_1193 hemolysin other 1 41671 41904
AJA42718.1 KM983330_p28 hypothetical protein phrog_17522 unknown function unknown function 1 13957 14157
AJA42732.1 KM983330_p42 hypothetical protein phrog_8435 unknown function unknown function 1 24667 25032
AJA42726.1 KM983330_p36 hypothetical protein phrog_1048 unknown function unknown function 1 21903 22103
AJA42723.1 KM983330_p33 membrane spanning protein phrog_21287 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 19432 19905
AJA42743.1 KM983330_p53 hypothetical protein phrog_16549 unknown function unknown function 1 32143 33174
AJA42706.1 KM983330_p16 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 9379 9807
AJA42720.1 KM983330_p30 terminase small subunit phrog_2606 terminase small subunit head and packaging 1 15662 16585
AJA42740.1 KM983330_p50 hypothetical protein phrog_1887 tail protein tail 1 30144 31241
AJA42756.1 KM983330_p66 hypothetical protein phrog_18586 unknown function unknown function 1 44580 45386
AJA42698.1 KM983330_p8 hypothetical protein phrog_15040 unknown function unknown function -1 4386 4760
AJA42725.1 KM983330_p35 hypothetical protein phrog_19570 unknown function unknown function 1 21639 21839
AJA42702.1 KM983330_p12 RecT family recombinase phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7036 7842
AJA42722.1 KM983330_p32 portal protein phrog_64 portal protein head and packaging 1 17918 19375
AJA42724.1 KM983330_p34 head morphogenesis protein phrog_21401 pilot protein for DNA ejection tail 1 19942 21642
AJA42738.1 KM983330_p48 hypothetical protein phrog_1315 unknown function unknown function 1 27326 27652
AJA42695.1 KM983330_p5 Cro/Cl-type repressor phrog_8 transcriptional regulator transcription regulation -1 2715 3158
AJA42721.1 KM983330_p31 terminase large subunit phrog_2 terminase large subunit head and packaging 1 16575 17918
AJA42731.1 KM983330_p41 hypothetical protein phrog_4020 unknown function unknown function 1 24368 24670
AJA42712.1 KM983330_p22 hypothetical protein phrog_9430 unknown function unknown function 1 11875 12015
AJA42727.1 KM983330_p37 capsid scaffolding protein phrog_194 head scaffolding protein head and packaging 1 22103 22720
AJA42692.1 KM983330_p2 hypothetical protein phrog_15901 unknown function unknown function -1 1568 1852
AJA42708.1 KM983330_p18 hypothetical protein phrog_19436 unknown function unknown function 1 10447 10545
AJA42717.1 KM983330_p27 hypothetical protein phrog_18632 unknown function unknown function 1 13688 13930
AJA42701.1 KM983330_p11 endonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 5691 7034
AJA42715.1 KM983330_p25 siderophore-interacting protein phrog_36 transcriptional regulator transcription regulation 1 12576 13043
AJA42707.1 KM983330_p17 hypothetical protein phrog_11269 unknown function unknown function 1 9804 10433
AJA42696.1 KM983330_p6 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 3319 3534
AJA42711.1 KM983330_p21 hypothetical protein phrog_1455 unknown function unknown function 1 11675 11872
AJA42703.1 KM983330_p13 hypothetical protein phrog_10625 unknown function unknown function 1 7835 8014
AJA42709.1 KM983330_p19 general stress protein phrog_3636 DNA binding protein DNA, RNA and nucleotide metabolism -1 10608 11048
AJA42752.1 KM983330_p62 holin phrog_1129 holin lysis 1 41916 42185
AJA42710.1 KM983330_p20 hypothetical protein phrog_10701 unknown function unknown function 1 11533 11694
AJA42737.1 KM983330_p47 hypothetical protein phrog_6541 unknown function unknown function 1 27098 27313
AJA42739.1 KM983330_p49 tail tape measure protein phrog_28 tail length tape measure protein tail 1 27710 29755
AJA42753.1 KM983330_p63 N-acetylmuramoyl-L-alanine amidase phrog_10967 endolysin lysis 1 42186 42986
AJA42736.1 KM983330_p46 hypothetical protein phrog_6280 unknown function unknown function 1 26695 27159
AJA42749.1 KM983330_p59 hypothetical protein phrog_10667 unknown function unknown function 1 38759 39544
AJA42741.1 KM983330_p51 hypothetical protein phrog_13713 unknown function unknown function 1 31241 31573
AJA42728.1 KM983330_p38 hypothetical protein phrog_909 major head protein head and packaging 1 22735 23067
AJA42735.1 KM983330_p45 hypothetical protein phrog_6686 tail tube protein tail 1 25810 26682
AJA42704.1 KM983330_p14 replication protein DnaD phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 8032 8910
AJA42755.1 KM983330_p65 hypothetical protein phrog_18087 unknown function unknown function 1 44219 44587
AJA42714.1 KM983330_p24 XRE family transcriptional regulator phrog_14101 transcriptional regulator transcription regulation 1 12253 12564
AJA42729.1 KM983330_p39 major capsid protein phrog_29 major head protein head and packaging 1 23087 24121