Genomic map of Mycobacterium phage Treddle (KP027203)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KP027203
Definition
Mycobacterium phage Treddle, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
PVOG
Length
53008
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
63.86
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AJA43486.1 KP027203_p5 hypothetical protein phrog_1197 tail protein tail 1 2143 3240
AJA43566.1 KP027203_p85 hypothetical protein phrog_2212 unknown function unknown function -1 49845 49958
AJA43562.1 KP027203_p81 hypothetical protein phrog_1155 unknown function unknown function -1 48746 48934
AJA43508.1 KP027203_p27 minor tail protein phrog_106 minor tail protein tail 1 20118 22175
AJA43492.1 KP027203_p11 lysin B phrog_102 endolysin lysis 1 6485 7453
AJA43497.1 KP027203_p16 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 12039 12551
AJA43536.1 KP027203_p55 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38975 39496
AJA43556.1 KP027203_p75 hypothetical protein phrog_1584 unknown function unknown function -1 46459 46776
AJA43500.1 KP027203_p19 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 14175 14624
AJA43522.1 KP027203_p41 hypothetical protein phrog_1966 unknown function unknown function -1 32743 33009
AJA43543.1 KP027203_p62 hypothetical protein phrog_1019 unknown function unknown function -1 42182 42301
AJA43505.1 KP027203_p25 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16713 17189
AJA43495.1 KP027203_p14 portal protein phrog_104 portal protein head and packaging 1 9660 11102
AJA43524.1 KP027203_p43 hypothetical protein phrog_1860 unknown function unknown function -1 33173 33268
AJA43498.1 KP027203_p17 major capsid protein phrog_10 major head protein head and packaging 1 12562 13578
AJA43567.1 KP027203_p86 hypothetical protein phrog_2985 unknown function unknown function -1 50250 50405
AJA43534.1 KP027203_p53 hypothetical protein phrog_1503 unknown function unknown function -1 38404 38583
AJA43565.1 KP027203_p84 hypothetical protein phrog_932 unknown function unknown function -1 49246 49395
AJA43484.1 KP027203_p3 hypothetical protein phrog_226 minor tail protein tail 1 1082 1522
AJA43511.1 KP027203_p30 hypothetical protein phrog_352 minor tail protein tail 1 24194 24640
AJA43558.1 KP027203_p77 hypothetical protein phrog_357 transcriptional repressor transcription regulation -1 47210 47722
AJA43550.1 KP027203_p69 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44452 45255
AJA43531.1 KP027203_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36711 37502
AJA43502.1 KP027203_p21 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14986 15381
AJA43521.1 KP027203_p40 hypothetical protein phrog_27933 unknown function unknown function -1 32334 32726
AJA43496.1 KP027203_p15 capsid maturation protease phrog_193 head maturation protease head and packaging 1 11099 11980
AJA43523.1 KP027203_p42 hypothetical protein phrog_2035 unknown function unknown function -1 33006 33176
AJA43532.1 KP027203_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 37495 37635
AJA43563.1 KP027203_p82 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48934 49101
AJA43529.1 KP027203_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 36044 36535
AJA43493.1 KP027203_p12 HNH domain protein phrog_8660 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7473 7991
AJA43482.1 KP027203_p1 hypothetical protein phrog_4649 unknown function unknown function 1 601 753
AJA43494.1 KP027203_p13 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7975 9663
AJA43554.1 KP027203_p73 hypothetical protein phrog_5947 unknown function unknown function -1 46090 46242
AJA43517.1 KP027203_p36 hypothetical protein phrog_1560 unknown function unknown function 1 29053 29244
AJA43555.1 KP027203_p74 hypothetical protein phrog_17362 unknown function unknown function -1 46235 46462
AJA43560.1 KP027203_p79 hypothetical protein phrog_1720 unknown function unknown function -1 48280 48549
AJA43533.1 KP027203_p52 hypothetical protein phrog_221 metallo-phosphoesterase other -1 37640 38407
AJA43573.1 KP027203_p92 hypothetical protein phrog_13961 unknown function unknown function -1 51759 52259
AJA43510.1 KP027203_p29 minor tail protein phrog_110 minor tail protein tail 1 22354 24156
AJA43499.1 KP027203_p18 hypothetical protein phrog_1857 head-tail connector protein connector 1 13657 14175
AJA43561.1 KP027203_p80 hypothetical protein phrog_1387 unknown function unknown function -1 48546 48749
AJA43548.1 KP027203_p67 hypothetical protein phrog_2184 unknown function unknown function -1 43793 44107
AJA43485.1 KP027203_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1700 1906
AJA43564.1 KP027203_p83 hypothetical protein phrog_2093 unknown function unknown function -1 49098 49226
AJA43552.1 KP027203_p71 hypothetical protein phrog_23949 unknown function unknown function -1 45470 45862
AJA43483.1 KP027203_p2 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 750 1046
AJA43575.1 KP027203_p94 hypothetical protein singleton unknown function unknown function -1 52475 52645
AJA43519.1 KP027203_p38 hypothetical protein phrog_411 unknown function unknown function 1 30321 30605
AJA43540.1 KP027203_p59 hypothetical protein phrog_397 unknown function unknown function -1 40399 40533
AJA43504.1 KP027203_p23 major tail protein phrog_117 major tail protein tail 1 15840 16691
AJA43557.1 KP027203_p76 hypothetical protein phrog_1809 unknown function unknown function -1 46773 47168
AJA43525.1 KP027203_p44 hypothetical protein phrog_1971 unknown function unknown function -1 33265 33543
AJA43542.1 KP027203_p61 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 41701 42195
AJA43518.1 KP027203_p37 hypothetical protein phrog_754 minor tail protein tail 1 29241 30200
AJA43537.1 KP027203_p56 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39342 39857
AJA43541.1 KP027203_p60 DNA methylase phrog_67 DNA methyltransferase other -1 40559 41704
AJA43571.1 KP027203_p90 hypothetical protein phrog_828 unknown function unknown function 1 51379 51582
AJA43512.1 KP027203_p31 hypothetical protein phrog_981 minor tail protein tail 1 24637 24984
AJA43569.1 KP027203_p88 hypothetical protein phrog_5533 unknown function unknown function -1 50980 51165
AJA43513.1 KP027203_p32 hypothetical protein phrog_1397 unknown function unknown function 1 24987 25280
AJA43487.1 KP027203_p6 hypothetical protein phrog_553 minor tail protein tail 1 3259 3960
AJA43574.1 KP027203_p93 hypothetical protein phrog_18559 unknown function unknown function -1 52256 52405
AJA43506.1 KP027203_p24 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 16713 17611
AJA43509.1 KP027203_p28 hypothetical protein phrog_1543 minor tail protein tail 1 22172 22354
AJA43551.1 KP027203_p70 hypothetical protein phrog_27003 unknown function unknown function -1 45252 45473
AJA43539.1 KP027203_p58 hypothetical protein singleton unknown function unknown function -1 40089 40304
AJA43535.1 KP027203_p54 hypothetical protein phrog_474 phosphofructokinase other -1 38580 38978
AJA43491.1 KP027203_p10 lysin A phrog_317 endolysin lysis 1 5074 6495
AJA43507.1 KP027203_p26 tapemeasure phrog_305 tail length tape measure protein tail 1 17623 20094
AJA43546.1 KP027203_p65 hypothetical protein phrog_1705 unknown function unknown function -1 43360 43506
AJA43544.1 KP027203_p63 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 42298 42567
AJA43572.1 KP027203_p91 hypothetical protein phrog_11620 unknown function unknown function 1 51579 51704
AJA43501.1 KP027203_p20 hypothetical protein phrog_320 head closure Hc1 connector 1 14624 14986
AJA43528.1 KP027203_p47 hypothetical protein phrog_1781 unknown function unknown function -1 35783 36013
AJA43516.1 KP027203_p35 hypothetical protein phrog_644 unknown function unknown function 1 28720 29043
AJA43514.1 KP027203_p33 minor tail protein phrog_346 minor tail protein tail 1 25306 27159
AJA43545.1 KP027203_p64 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42564 43373
AJA43520.1 KP027203_p39 integrase phrog_95 integrase integration and excision 1 30758 32260
AJA43549.1 KP027203_p68 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 44104 44295
AJA43530.1 KP027203_p49 hypothetical protein phrog_499 unknown function unknown function -1 36532 36714
AJA43526.1 KP027203_p45 hypothetical protein phrog_383 unknown function unknown function -1 33540 33899
AJA43568.1 KP027203_p87 hypothetical protein phrog_5017 unknown function unknown function -1 50663 50980
AJA43547.1 KP027203_p66 hypothetical protein phrog_520 unknown function unknown function -1 43503 43796
AJA43489.1 KP027203_p8 hypothetical protein phrog_747 unknown function unknown function 1 4242 4499
AJA43559.1 KP027203_p78 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47984 48283
AJA43515.1 KP027203_p34 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 27152 28630
AJA43553.1 KP027203_p72 hypothetical protein phrog_6068 unknown function unknown function -1 45846 46097
AJA43488.1 KP027203_p7 hypothetical protein phrog_1718 tail protein tail 1 3974 4234
AJA43527.1 KP027203_p46 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33920 35746
AJA43570.1 KP027203_p89 hypothetical protein phrog_2212 unknown function unknown function -1 51195 51278
AJA43503.1 KP027203_p22 hypothetical protein phrog_123 tail terminator connector 1 15385 15831
AJA43538.1 KP027203_p57 hypothetical protein phrog_1783 unknown function unknown function -1 39836 39994
AJA43490.1 KP027203_p9 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4499 5077