| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP027203 |
Definition |
Mycobacterium phage Treddle, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
PVOG |
Length |
53008 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.86 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AJA43486.1 | KP027203_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2143 | 3240 |
| AJA43566.1 | KP027203_p85 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49845 | 49958 |
| AJA43562.1 | KP027203_p81 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48746 | 48934 |
| AJA43508.1 | KP027203_p27 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 20118 | 22175 |
| AJA43492.1 | KP027203_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6485 | 7453 |
| AJA43497.1 | KP027203_p16 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12039 | 12551 |
| AJA43536.1 | KP027203_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38975 | 39496 |
| AJA43556.1 | KP027203_p75 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 46459 | 46776 |
| AJA43500.1 | KP027203_p19 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 14175 | 14624 |
| AJA43522.1 | KP027203_p41 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 32743 | 33009 |
| AJA43543.1 | KP027203_p62 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42182 | 42301 |
| AJA43505.1 | KP027203_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16713 | 17189 |
| AJA43495.1 | KP027203_p14 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9660 | 11102 |
| AJA43524.1 | KP027203_p43 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 33173 | 33268 |
| AJA43498.1 | KP027203_p17 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12562 | 13578 |
| AJA43567.1 | KP027203_p86 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 50250 | 50405 |
| AJA43534.1 | KP027203_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38404 | 38583 |
| AJA43565.1 | KP027203_p84 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49246 | 49395 |
| AJA43484.1 | KP027203_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1082 | 1522 |
| AJA43511.1 | KP027203_p30 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 24194 | 24640 |
| AJA43558.1 | KP027203_p77 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47210 | 47722 |
| AJA43550.1 | KP027203_p69 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44452 | 45255 |
| AJA43531.1 | KP027203_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36711 | 37502 |
| AJA43502.1 | KP027203_p21 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14986 | 15381 |
| AJA43521.1 | KP027203_p40 | hypothetical protein | phrog_27933 | unknown function | unknown function | -1 | 32334 | 32726 |
| AJA43496.1 | KP027203_p15 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11099 | 11980 |
| AJA43523.1 | KP027203_p42 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 33006 | 33176 |
| AJA43532.1 | KP027203_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37495 | 37635 |
| AJA43563.1 | KP027203_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48934 | 49101 |
| AJA43529.1 | KP027203_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 36044 | 36535 |
| AJA43493.1 | KP027203_p12 | HNH domain protein | phrog_8660 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7473 | 7991 |
| AJA43482.1 | KP027203_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 601 | 753 |
| AJA43494.1 | KP027203_p13 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7975 | 9663 |
| AJA43554.1 | KP027203_p73 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 46090 | 46242 |
| AJA43517.1 | KP027203_p36 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 29053 | 29244 |
| AJA43555.1 | KP027203_p74 | hypothetical protein | phrog_17362 | unknown function | unknown function | -1 | 46235 | 46462 |
| AJA43560.1 | KP027203_p79 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48280 | 48549 |
| AJA43533.1 | KP027203_p52 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 37640 | 38407 |
| AJA43573.1 | KP027203_p92 | hypothetical protein | phrog_13961 | unknown function | unknown function | -1 | 51759 | 52259 |
| AJA43510.1 | KP027203_p29 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 22354 | 24156 |
| AJA43499.1 | KP027203_p18 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 13657 | 14175 |
| AJA43561.1 | KP027203_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48546 | 48749 |
| AJA43548.1 | KP027203_p67 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43793 | 44107 |
| AJA43485.1 | KP027203_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1700 | 1906 |
| AJA43564.1 | KP027203_p83 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49098 | 49226 |
| AJA43552.1 | KP027203_p71 | hypothetical protein | phrog_23949 | unknown function | unknown function | -1 | 45470 | 45862 |
| AJA43483.1 | KP027203_p2 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 750 | 1046 |
| AJA43575.1 | KP027203_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52475 | 52645 |
| AJA43519.1 | KP027203_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 30321 | 30605 |
| AJA43540.1 | KP027203_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40399 | 40533 |
| AJA43504.1 | KP027203_p23 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15840 | 16691 |
| AJA43557.1 | KP027203_p76 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46773 | 47168 |
| AJA43525.1 | KP027203_p44 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 33265 | 33543 |
| AJA43542.1 | KP027203_p61 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41701 | 42195 |
| AJA43518.1 | KP027203_p37 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 29241 | 30200 |
| AJA43537.1 | KP027203_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39342 | 39857 |
| AJA43541.1 | KP027203_p60 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40559 | 41704 |
| AJA43571.1 | KP027203_p90 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 51379 | 51582 |
| AJA43512.1 | KP027203_p31 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24637 | 24984 |
| AJA43569.1 | KP027203_p88 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 50980 | 51165 |
| AJA43513.1 | KP027203_p32 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24987 | 25280 |
| AJA43487.1 | KP027203_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3259 | 3960 |
| AJA43574.1 | KP027203_p93 | hypothetical protein | phrog_18559 | unknown function | unknown function | -1 | 52256 | 52405 |
| AJA43506.1 | KP027203_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16713 | 17611 |
| AJA43509.1 | KP027203_p28 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 22172 | 22354 |
| AJA43551.1 | KP027203_p70 | hypothetical protein | phrog_27003 | unknown function | unknown function | -1 | 45252 | 45473 |
| AJA43539.1 | KP027203_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40089 | 40304 |
| AJA43535.1 | KP027203_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38580 | 38978 |
| AJA43491.1 | KP027203_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5074 | 6495 |
| AJA43507.1 | KP027203_p26 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 17623 | 20094 |
| AJA43546.1 | KP027203_p65 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 43360 | 43506 |
| AJA43544.1 | KP027203_p63 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42298 | 42567 |
| AJA43572.1 | KP027203_p91 | hypothetical protein | phrog_11620 | unknown function | unknown function | 1 | 51579 | 51704 |
| AJA43501.1 | KP027203_p20 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 14624 | 14986 |
| AJA43528.1 | KP027203_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35783 | 36013 |
| AJA43516.1 | KP027203_p35 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28720 | 29043 |
| AJA43514.1 | KP027203_p33 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 25306 | 27159 |
| AJA43545.1 | KP027203_p64 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42564 | 43373 |
| AJA43520.1 | KP027203_p39 | integrase | phrog_95 | integrase | integration and excision | 1 | 30758 | 32260 |
| AJA43549.1 | KP027203_p68 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44104 | 44295 |
| AJA43530.1 | KP027203_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36532 | 36714 |
| AJA43526.1 | KP027203_p45 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 33540 | 33899 |
| AJA43568.1 | KP027203_p87 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 50663 | 50980 |
| AJA43547.1 | KP027203_p66 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43503 | 43796 |
| AJA43489.1 | KP027203_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4242 | 4499 |
| AJA43559.1 | KP027203_p78 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47984 | 48283 |
| AJA43515.1 | KP027203_p34 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 27152 | 28630 |
| AJA43553.1 | KP027203_p72 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 45846 | 46097 |
| AJA43488.1 | KP027203_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3974 | 4234 |
| AJA43527.1 | KP027203_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33920 | 35746 |
| AJA43570.1 | KP027203_p89 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51195 | 51278 |
| AJA43503.1 | KP027203_p22 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15385 | 15831 |
| AJA43538.1 | KP027203_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39836 | 39994 |
| AJA43490.1 | KP027203_p9 | hypothetical protein | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4499 | 5077 |