| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP296794 |
Definition |
Bacteriophage Redbud, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sitaravirus; unclassified Sitaravirus. |
DB of origin |
PVOG |
Length |
37971 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
41.81 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AJK27912.1 | KP296794_p53 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 33434 | 33817 |
| AJK27915.1 | KP296794_p56 | hypothetical protein | phrog_5494 | unknown function | unknown function | 1 | 34738 | 35196 |
| AJK27862.1 | KP296794_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2084 | 3319 |
| AJK27878.1 | KP296794_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 13806 | 13967 |
| AJK27914.1 | KP296794_p55 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34022 | 34579 |
| AJK27867.1 | KP296794_p8 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 5534 | 5857 |
| AJK27894.1 | KP296794_p35 | hypothetical protein | phrog_12765 | unknown function | unknown function | 1 | 23262 | 23480 |
| AJK27916.1 | KP296794_p57 | ArpU-like transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 35247 | 35687 |
| AJK27919.1 | KP296794_p60 | transglycosylase-like protein | phrog_1315 | unknown function | unknown function | 1 | 37316 | 37582 |
| AJK27901.1 | KP296794_p42 | ATPase | phrog_1499 | unknown function | unknown function | 1 | 25799 | 27328 |
| AJK27892.1 | KP296794_p33 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 22259 | 22498 |
| AJK27861.1 | KP296794_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 345 | 2069 |
| AJK27883.1 | KP296794_p24 | hypothetical protein | phrog_26129 | unknown function | unknown function | -1 | 15670 | 16464 |
| AJK27860.1 | KP296794_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 50 | 364 |
| AJK27875.1 | KP296794_p16 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 11264 | 12382 |
| AJK27876.1 | KP296794_p17 | tail protein | phrog_5339 | virion structural protein | head and packaging | 1 | 12388 | 13461 |
| AJK27870.1 | KP296794_p11 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 6666 | 7103 |
| AJK27917.1 | KP296794_p58 | HicB-like protein | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 35827 | 36249 |
| AJK27887.1 | KP296794_p28 | anti-repressor like protein | phrog_17477 | anti-repressor | transcription regulation | 1 | 18213 | 18656 |
| AJK27873.1 | KP296794_p14 | tail tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 7777 | 10413 |
| AJK27902.1 | KP296794_p43 | hypothetical protein | phrog_5189 | unknown function | unknown function | 1 | 27325 | 27522 |
| AJK27882.1 | KP296794_p23 | hypothetical protein | phrog_24359 | unknown function | unknown function | -1 | 15353 | 15592 |
| AJK27918.1 | KP296794_p59 | HicA-like protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 36311 | 36526 |
| AJK27900.1 | KP296794_p41 | hypothetical protein | phrog_8288 | unknown function | unknown function | 1 | 25525 | 25815 |
| AJK27864.1 | KP296794_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4022 | 5014 |
| AJK27893.1 | KP296794_p34 | DNA binding antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 22495 | 23235 |
| AJK27911.1 | KP296794_p52 | MazG-like nucleotide pyrophosphohydrolase | phrog_715 | MazG-like pyrophosphatase | other | 1 | 33022 | 33327 |
| AJK27896.1 | KP296794_p37 | hypothetical protein | phrog_9497 | unknown function | unknown function | 1 | 23758 | 24021 |
| AJK27874.1 | KP296794_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 10410 | 11261 |
| AJK27909.1 | KP296794_p50 | DNA-cytosine methyltransferase | phrog_363 | DNA methyltransferase | other | 1 | 31973 | 33025 |
| AJK27868.1 | KP296794_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5857 | 6285 |
| AJK27885.1 | KP296794_p26 | hypothetical protein | phrog_806 | unknown function | unknown function | -1 | 17183 | 17734 |
| AJK27879.1 | KP296794_p20 | bacteriocin-like protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 13948 | 14187 |
| AJK27907.1 | KP296794_p48 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 30326 | 31654 |
| AJK27903.1 | KP296794_p44 | RecT-like protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 27525 | 28439 |
| AJK27908.1 | KP296794_p49 | hypothetical protein | phrog_6868 | unknown function | unknown function | 1 | 31657 | 31962 |
| AJK27910.1 | KP296794_p51 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 32157 | 32861 |
| AJK27871.1 | KP296794_p12 | hypothetical protein | phrog_7902 | unknown function | unknown function | 1 | 7100 | 7438 |
| AJK27899.1 | KP296794_p40 | hypothetical protein | phrog_8406 | unknown function | unknown function | 1 | 25257 | 25520 |
| AJK27889.1 | KP296794_p30 | transcriptional regulator | phrog_18248 | transcriptional regulator | transcription regulation | -1 | 20238 | 21032 |
| AJK27897.1 | KP296794_p38 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 24048 | 24806 |
| AJK27886.1 | KP296794_p27 | hypothetical protein | phrog_19875 | unknown function | unknown function | -1 | 17831 | 18109 |
| AJK27913.1 | KP296794_p54 | hypothetical protein | phrog_6998 | unknown function | unknown function | 1 | 33810 | 34025 |
| AJK27890.1 | KP296794_p31 | DNA binding protein | phrog_1468 | transcriptional repressor | transcription regulation | 1 | 21296 | 21493 |
| AJK27904.1 | KP296794_p45 | beta-lactamase-like hydrolase | phrog_392 | metal-dependent hydrolase | other | 1 | 28452 | 29210 |
| AJK27905.1 | KP296794_p46 | hypothetical protein | phrog_7503 | unknown function | unknown function | 1 | 29207 | 29521 |
| AJK27880.1 | KP296794_p21 | N-acetylmuramoyl-L-alanine amidase-like protein | phrog_3088 | amidase | lysis | 1 | 14187 | 14858 |
| AJK27865.1 | KP296794_p6 | hypothetical protein | phrog_6793 | unknown function | unknown function | 1 | 5117 | 5281 |
| AJK27863.1 | KP296794_p4 | Clp protease-like protein | phrog_94 | head maturation protease | head and packaging | 1 | 3309 | 4025 |
| AJK27895.1 | KP296794_p36 | hypothetical protein | phrog_12380 | unknown function | unknown function | 1 | 23525 | 23752 |
| AJK27866.1 | KP296794_p7 | head-tail connector | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5274 | 5537 |
| AJK27891.1 | KP296794_p32 | DNA binding antirepressor-like protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 21490 | 22230 |
| AJK27920.1 | KP296794_p61 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37579 | 37917 |
| AJK27884.1 | KP296794_p25 | hypothetical protein | phrog_24293 | unknown function | unknown function | 1 | 16636 | 16872 |
| AJK27888.1 | KP296794_p29 | integrase | phrog_1 | integrase | integration and excision | -1 | 18968 | 20191 |
| AJK27881.1 | KP296794_p22 | holin-like protein | phrog_1299 | holin | lysis | 1 | 14868 | 15110 |
| AJK27906.1 | KP296794_p47 | primosome component-like protein | phrog_2514 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 29536 | 30366 |
| AJK27877.1 | KP296794_p18 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 13471 | 13806 |
| AJK27869.1 | KP296794_p10 | tail protein | phrog_176 | tail terminator | connector | 1 | 6269 | 6664 |
| AJK27872.1 | KP296794_p13 | hypothetical protein | phrog_7848 | unknown function | unknown function | 1 | 7465 | 7719 |
| AJK27898.1 | KP296794_p39 | hypothetical protein | phrog_12825 | unknown function | unknown function | 1 | 24803 | 25282 |