| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KP793108 |
Definition |
Lactococcus phage 936 group phage Phi5.12, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
PVOG |
Length |
29026 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
34.74 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ALM63442.1 | KP793108_p43 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 24632 | 24922 |
| ALM63433.1 | KP793108_p34 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 20199 | 20543 |
| ALM63403.1 | KP793108_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2848 | 3132 |
| ALM63439.1 | KP793108_p40 | SAK protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 23062 | 23616 |
| ALM63438.1 | KP793108_p39 | SSB protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 22699 | 23058 |
| ALM63418.1 | KP793108_p19 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 14661 | 14954 |
| ALM63402.1 | KP793108_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1236 | 2858 |
| ALM63421.1 | KP793108_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 16109 | 16816 |
| ALM63411.1 | KP793108_p13 | major tail protein | phrog_1433 | major tail protein | tail | 1 | 7276 | 8181 |
| ALM63401.1 | KP793108_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 773 | 1234 |
| ALM63432.1 | KP793108_p33 | hypothetical protein | phrog_1083 | unknown function | unknown function | -1 | 19873 | 20196 |
| ALM63427.1 | KP793108_p28 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 18579 | 18833 |
| ALM63410.1 | KP793108_p11 | strucural protein 4 | phrog_1440 | virion structural protein | head and packaging | 1 | 6898 | 7263 |
| ALM63419.1 | KP793108_p20 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 14944 | 15738 |
| ALM63450.1 | KP793108_p51 | middle expressed protein 2 | phrog_1436 | unknown function | unknown function | 1 | 28045 | 28176 |
| ALM63443.1 | KP793108_p44 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 25005 | 25268 |
| ALM63426.1 | KP793108_p27 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 18410 | 18586 |
| ALM63425.1 | KP793108_p26 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 18243 | 18410 |
| ALM63451.1 | KP793108_p52 | holiday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28173 | 28655 |
| ALM63409.1 | KP793108_p10 | strucural protein 3 | phrog_1484 | virion structural protein | head and packaging | 1 | 6566 | 6907 |
| ALM63437.1 | KP793108_p38 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 22474 | 22686 |
| ALM63407.1 | KP793108_p8 | strucural protein 1 | phrog_1428 | head-tail connector protein | connector | 1 | 5992 | 6255 |
| ALM63420.1 | KP793108_p21 | holin | phrog_1379 | unknown function | unknown function | 1 | 15759 | 16112 |
| ALM63448.1 | KP793108_p49 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 27593 | 27781 |
| ALM63436.1 | KP793108_p37 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 21968 | 22477 |
| ALM63413.1 | KP793108_p14 | strucural protein 5 | phrog_1420 | virion structural protein | head and packaging | 1 | 8842 | 9117 |
| ALM63444.1 | KP793108_p45 | hypothetical protein | phrog_3604 | unknown function | unknown function | -1 | 25255 | 25452 |
| ALM63405.1 | KP793108_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4261 | 4797 |
| ALM63423.1 | KP793108_p24 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 17545 | 17817 |
| ALM63449.1 | KP793108_p50 | middle expressed protein 1 | phrog_1952 | unknown function | unknown function | 1 | 27912 | 28040 |
| ALM63440.1 | KP793108_p41 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 23613 | 24425 |
| ALM63404.1 | KP793108_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 3126 | 4280 |
| ALM63424.1 | KP793108_p25 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 17896 | 18243 |
| ALM63406.1 | KP793108_p7 | major capsid protein | phrog_1393 | minor head protein | head and packaging | 1 | 4790 | 5971 |
| ALM63412.1 | KP793108_p12 | major tail protein extension | phrog_3791 | major tail protein | tail | 1 | 7276 | 8821 |
| ALM63428.1 | KP793108_p29 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 18896 | 19084 |
| ALM63417.1 | KP793108_p18 | tail associated lysin | phrog_1432 | tail associated lysin | tail | 1 | 13544 | 14671 |
| ALM63445.1 | KP793108_p46 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 25445 | 26341 |
| ALM63434.1 | KP793108_p35 | methylase | phrog_56 | DNA methyltransferase | other | -1 | 20605 | 21648 |
| ALM63414.1 | KP793108_p15 | strucural protein 6 | phrog_1421 | virion structural protein | head and packaging | 1 | 9137 | 9649 |
| ALM63415.1 | KP793108_p16 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9649 | 12648 |
| ALM63452.1 | KP793108_p53 | middle expressed protein 4 | phrog_1652 | unknown function | unknown function | 1 | 28652 | 28819 |
| ALM63447.1 | KP793108_p48 | hypothetical protein | phrog_2413 | unknown function | unknown function | -1 | 27060 | 27179 |
| ALM63422.1 | KP793108_p23 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 16966 | 17484 |
| ALM63416.1 | KP793108_p17 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 12648 | 13544 |
| ALM63429.1 | KP793108_p30 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 19160 | 19357 |
| ALM63435.1 | KP793108_p36 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 21641 | 21889 |
| ALM63431.1 | KP793108_p32 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 19743 | 19862 |
| ALM63400.1 | KP793108_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| ALM63408.1 | KP793108_p9 | strucural protein 2 | phrog_1429 | virion structural protein | head and packaging | 1 | 6255 | 6569 |
| ALM63446.1 | KP793108_p47 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 26398 | 26583 |
| ALM63441.1 | KP793108_p42 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 24412 | 24678 |
| ALM63430.1 | KP793108_p31 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 19434 | 19742 |